Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4330

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4329 and EX28DRAFT_4330 are separated by 31 nucleotidesEX28DRAFT_4330 and EX28DRAFT_4331 are separated by 270 nucleotides EX28DRAFT_4329: EX28DRAFT_4329 - isocitrate lyase, at 136,581 to 137,885 _4329 EX28DRAFT_4330: EX28DRAFT_4330 - malate synthase A, at 137,917 to 139,518 _4330 EX28DRAFT_4331: EX28DRAFT_4331 - homoserine O-succinyltransferase (EC 2.3.1.46), at 139,789 to 140,718 _4331 Position (kb) 137 138 139 140Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2at 136.939 kb on + strand, within EX28DRAFT_4329at 136.939 kb on + strand, within EX28DRAFT_4329at 136.940 kb on - strand, within EX28DRAFT_4329at 137.099 kb on - strand, within EX28DRAFT_4329at 137.162 kb on + strand, within EX28DRAFT_4329at 137.437 kb on + strand, within EX28DRAFT_4329at 137.437 kb on + strand, within EX28DRAFT_4329at 137.438 kb on - strand, within EX28DRAFT_4329at 137.438 kb on - strand, within EX28DRAFT_4329at 137.569 kb on + strand, within EX28DRAFT_4329at 137.570 kb on - strand, within EX28DRAFT_4329at 137.620 kb on + strand, within EX28DRAFT_4329at 137.621 kb on - strand, within EX28DRAFT_4329at 137.621 kb on - strand, within EX28DRAFT_4329at 137.621 kb on - strand, within EX28DRAFT_4329at 137.621 kb on - strand, within EX28DRAFT_4329at 137.625 kb on - strand, within EX28DRAFT_4329at 137.625 kb on - strand, within EX28DRAFT_4329at 137.807 kb on - strandat 137.807 kb on - strandat 137.900 kb on + strandat 137.900 kb on + strandat 137.900 kb on + strandat 137.903 kb on + strandat 137.903 kb on + strandat 137.903 kb on + strandat 137.904 kb on - strandat 137.904 kb on - strandat 137.904 kb on - strandat 137.904 kb on - strandat 137.904 kb on - strandat 137.904 kb on - strandat 137.906 kb on + strandat 137.906 kb on + strandat 137.907 kb on - strandat 137.907 kb on - strandat 137.907 kb on - strandat 137.907 kb on - strandat 137.918 kb on + strandat 137.959 kb on + strandat 137.960 kb on - strandat 138.154 kb on - strand, within EX28DRAFT_4330at 138.195 kb on - strand, within EX28DRAFT_4330at 138.198 kb on + strand, within EX28DRAFT_4330at 138.198 kb on + strand, within EX28DRAFT_4330at 138.199 kb on - strand, within EX28DRAFT_4330at 138.199 kb on - strand, within EX28DRAFT_4330at 138.202 kb on + strand, within EX28DRAFT_4330at 138.202 kb on + strand, within EX28DRAFT_4330at 138.236 kb on + strand, within EX28DRAFT_4330at 138.237 kb on - strand, within EX28DRAFT_4330at 138.671 kb on + strand, within EX28DRAFT_4330at 138.682 kb on - strand, within EX28DRAFT_4330at 138.884 kb on + strand, within EX28DRAFT_4330at 138.923 kb on + strand, within EX28DRAFT_4330at 139.018 kb on + strand, within EX28DRAFT_4330at 139.019 kb on - strand, within EX28DRAFT_4330at 139.080 kb on + strand, within EX28DRAFT_4330at 139.083 kb on - strand, within EX28DRAFT_4330at 139.383 kb on + strandat 139.384 kb on - strandat 139.384 kb on - strandat 139.386 kb on + strandat 139.470 kb on - strandat 139.520 kb on - strandat 139.580 kb on + strandat 139.581 kb on - strandat 139.600 kb on + strandat 139.790 kb on + strandat 139.844 kb on + strandat 139.847 kb on + strandat 139.848 kb on - strandat 139.861 kb on - strandat 139.932 kb on - strand, within EX28DRAFT_4331at 139.938 kb on - strand, within EX28DRAFT_4331at 139.938 kb on - strand, within EX28DRAFT_4331at 139.938 kb on - strand, within EX28DRAFT_4331at 139.943 kb on - strand, within EX28DRAFT_4331at 139.953 kb on + strand, within EX28DRAFT_4331at 139.953 kb on + strand, within EX28DRAFT_4331at 140.060 kb on + strand, within EX28DRAFT_4331at 140.060 kb on + strand, within EX28DRAFT_4331at 140.061 kb on - strand, within EX28DRAFT_4331at 140.061 kb on - strand, within EX28DRAFT_4331at 140.105 kb on + strand, within EX28DRAFT_4331at 140.216 kb on + strand, within EX28DRAFT_4331at 140.314 kb on - strand, within EX28DRAFT_4331at 140.453 kb on + strand, within EX28DRAFT_4331at 140.454 kb on - strand, within EX28DRAFT_4331

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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136,939 + EX28DRAFT_4329 0.27 -0.0
136,939 + EX28DRAFT_4329 0.27 -0.1
136,940 - EX28DRAFT_4329 0.28 -0.4
137,099 - EX28DRAFT_4329 0.40 -0.9
137,162 + EX28DRAFT_4329 0.45 -0.1
137,437 + EX28DRAFT_4329 0.66 +0.0
137,437 + EX28DRAFT_4329 0.66 -0.0
137,438 - EX28DRAFT_4329 0.66 +0.3
137,438 - EX28DRAFT_4329 0.66 +0.5
137,569 + EX28DRAFT_4329 0.76 +0.5
137,570 - EX28DRAFT_4329 0.76 +0.3
137,620 + EX28DRAFT_4329 0.80 +0.4
137,621 - EX28DRAFT_4329 0.80 -0.0
137,621 - EX28DRAFT_4329 0.80 +0.5
137,621 - EX28DRAFT_4329 0.80 +0.3
137,621 - EX28DRAFT_4329 0.80 -3.0
137,625 - EX28DRAFT_4329 0.80 +1.2
137,625 - EX28DRAFT_4329 0.80 -0.4
137,807 - +0.6
137,807 - +0.0
137,900 + -0.6
137,900 + +0.3
137,900 + +0.3
137,903 + -0.1
137,903 + -0.1
137,903 + -0.3
137,904 - -0.1
137,904 - -0.9
137,904 - +0.4
137,904 - +0.0
137,904 - +0.1
137,904 - +0.6
137,906 + +1.5
137,906 + +1.4
137,907 - +2.1
137,907 - +0.6
137,907 - -0.0
137,907 - +0.5
137,918 + +0.1
137,959 + -0.1
137,960 - +1.4
138,154 - EX28DRAFT_4330 0.15 +0.3
138,195 - EX28DRAFT_4330 0.17 -0.1
138,198 + EX28DRAFT_4330 0.18 +0.4
138,198 + EX28DRAFT_4330 0.18 +0.1
138,199 - EX28DRAFT_4330 0.18 -1.7
138,199 - EX28DRAFT_4330 0.18 +0.9
138,202 + EX28DRAFT_4330 0.18 -0.4
138,202 + EX28DRAFT_4330 0.18 +0.2
138,236 + EX28DRAFT_4330 0.20 -3.6
138,237 - EX28DRAFT_4330 0.20 -0.6
138,671 + EX28DRAFT_4330 0.47 -0.0
138,682 - EX28DRAFT_4330 0.48 -0.5
138,884 + EX28DRAFT_4330 0.60 +0.3
138,923 + EX28DRAFT_4330 0.63 -0.8
139,018 + EX28DRAFT_4330 0.69 -0.3
139,019 - EX28DRAFT_4330 0.69 -0.0
139,080 + EX28DRAFT_4330 0.73 -0.4
139,083 - EX28DRAFT_4330 0.73 +0.4
139,383 + +0.6
139,384 - -0.3
139,384 - +1.0
139,386 + -0.0
139,470 - -0.9
139,520 - +0.2
139,580 + -0.3
139,581 - +0.3
139,600 + -0.1
139,790 + +0.8
139,844 + -0.2
139,847 + -2.1
139,848 - -2.1
139,861 - -0.4
139,932 - EX28DRAFT_4331 0.15 -0.8
139,938 - EX28DRAFT_4331 0.16 -0.6
139,938 - EX28DRAFT_4331 0.16 -0.8
139,938 - EX28DRAFT_4331 0.16 -2.7
139,943 - EX28DRAFT_4331 0.17 -2.2
139,953 + EX28DRAFT_4331 0.18 -0.8
139,953 + EX28DRAFT_4331 0.18 -2.3
140,060 + EX28DRAFT_4331 0.29 -4.4
140,060 + EX28DRAFT_4331 0.29 -1.6
140,061 - EX28DRAFT_4331 0.29 -1.0
140,061 - EX28DRAFT_4331 0.29 -6.7
140,105 + EX28DRAFT_4331 0.34 -2.6
140,216 + EX28DRAFT_4331 0.46 -3.9
140,314 - EX28DRAFT_4331 0.56 -0.2
140,453 + EX28DRAFT_4331 0.71 -3.0
140,454 - EX28DRAFT_4331 0.72 -1.7

Or see this region's nucleotide sequence