Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4329 and EX28DRAFT_4330 are separated by 31 nucleotides EX28DRAFT_4330 and EX28DRAFT_4331 are separated by 270 nucleotides
EX28DRAFT_4329: EX28DRAFT_4329 - isocitrate lyase, at 136,581 to 137,885
_4329
EX28DRAFT_4330: EX28DRAFT_4330 - malate synthase A, at 137,917 to 139,518
_4330
EX28DRAFT_4331: EX28DRAFT_4331 - homoserine O-succinyltransferase (EC 2.3.1.46), at 139,789 to 140,718
_4331
Position (kb)
137
138
139
140 Strain fitness (log2 ratio)
-6
-5
-4
-3
-2
-1
0
1
2 at 136.939 kb on + strand, within EX28DRAFT_4329 at 136.939 kb on + strand, within EX28DRAFT_4329 at 136.940 kb on - strand, within EX28DRAFT_4329 at 137.099 kb on - strand, within EX28DRAFT_4329 at 137.162 kb on + strand, within EX28DRAFT_4329 at 137.437 kb on + strand, within EX28DRAFT_4329 at 137.437 kb on + strand, within EX28DRAFT_4329 at 137.438 kb on - strand, within EX28DRAFT_4329 at 137.438 kb on - strand, within EX28DRAFT_4329 at 137.569 kb on + strand, within EX28DRAFT_4329 at 137.570 kb on - strand, within EX28DRAFT_4329 at 137.620 kb on + strand, within EX28DRAFT_4329 at 137.621 kb on - strand, within EX28DRAFT_4329 at 137.621 kb on - strand, within EX28DRAFT_4329 at 137.621 kb on - strand, within EX28DRAFT_4329 at 137.621 kb on - strand, within EX28DRAFT_4329 at 137.625 kb on - strand, within EX28DRAFT_4329 at 137.625 kb on - strand, within EX28DRAFT_4329 at 137.807 kb on - strand at 137.807 kb on - strand at 137.900 kb on + strand at 137.900 kb on + strand at 137.900 kb on + strand at 137.903 kb on + strand at 137.903 kb on + strand at 137.903 kb on + strand at 137.904 kb on - strand at 137.904 kb on - strand at 137.904 kb on - strand at 137.904 kb on - strand at 137.904 kb on - strand at 137.904 kb on - strand at 137.906 kb on + strand at 137.906 kb on + strand at 137.907 kb on - strand at 137.907 kb on - strand at 137.907 kb on - strand at 137.907 kb on - strand at 137.918 kb on + strand at 137.959 kb on + strand at 137.960 kb on - strand at 138.154 kb on - strand, within EX28DRAFT_4330 at 138.195 kb on - strand, within EX28DRAFT_4330 at 138.198 kb on + strand, within EX28DRAFT_4330 at 138.198 kb on + strand, within EX28DRAFT_4330 at 138.199 kb on - strand, within EX28DRAFT_4330 at 138.199 kb on - strand, within EX28DRAFT_4330 at 138.202 kb on + strand, within EX28DRAFT_4330 at 138.202 kb on + strand, within EX28DRAFT_4330 at 138.236 kb on + strand, within EX28DRAFT_4330 at 138.237 kb on - strand, within EX28DRAFT_4330 at 138.671 kb on + strand, within EX28DRAFT_4330 at 138.682 kb on - strand, within EX28DRAFT_4330 at 138.884 kb on + strand, within EX28DRAFT_4330 at 138.923 kb on + strand, within EX28DRAFT_4330 at 139.018 kb on + strand, within EX28DRAFT_4330 at 139.019 kb on - strand, within EX28DRAFT_4330 at 139.080 kb on + strand, within EX28DRAFT_4330 at 139.083 kb on - strand, within EX28DRAFT_4330 at 139.383 kb on + strand at 139.384 kb on - strand at 139.384 kb on - strand at 139.386 kb on + strand at 139.470 kb on - strand at 139.520 kb on - strand at 139.580 kb on + strand at 139.581 kb on - strand at 139.600 kb on + strand at 139.790 kb on + strand at 139.844 kb on + strand at 139.847 kb on + strand at 139.848 kb on - strand at 139.861 kb on - strand at 139.932 kb on - strand, within EX28DRAFT_4331 at 139.938 kb on - strand, within EX28DRAFT_4331 at 139.938 kb on - strand, within EX28DRAFT_4331 at 139.938 kb on - strand, within EX28DRAFT_4331 at 139.943 kb on - strand, within EX28DRAFT_4331 at 139.953 kb on + strand, within EX28DRAFT_4331 at 139.953 kb on + strand, within EX28DRAFT_4331 at 140.060 kb on + strand, within EX28DRAFT_4331 at 140.060 kb on + strand, within EX28DRAFT_4331 at 140.061 kb on - strand, within EX28DRAFT_4331 at 140.061 kb on - strand, within EX28DRAFT_4331 at 140.105 kb on + strand, within EX28DRAFT_4331 at 140.216 kb on + strand, within EX28DRAFT_4331 at 140.314 kb on - strand, within EX28DRAFT_4331 at 140.453 kb on + strand, within EX28DRAFT_4331 at 140.454 kb on - strand, within EX28DRAFT_4331
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 136,939 + EX28DRAFT_4329 0.27 -0.0 136,939 + EX28DRAFT_4329 0.27 -0.1 136,940 - EX28DRAFT_4329 0.28 -0.4 137,099 - EX28DRAFT_4329 0.40 -0.9 137,162 + EX28DRAFT_4329 0.45 -0.1 137,437 + EX28DRAFT_4329 0.66 +0.0 137,437 + EX28DRAFT_4329 0.66 -0.0 137,438 - EX28DRAFT_4329 0.66 +0.3 137,438 - EX28DRAFT_4329 0.66 +0.5 137,569 + EX28DRAFT_4329 0.76 +0.5 137,570 - EX28DRAFT_4329 0.76 +0.3 137,620 + EX28DRAFT_4329 0.80 +0.4 137,621 - EX28DRAFT_4329 0.80 -0.0 137,621 - EX28DRAFT_4329 0.80 +0.5 137,621 - EX28DRAFT_4329 0.80 +0.3 137,621 - EX28DRAFT_4329 0.80 -3.0 137,625 - EX28DRAFT_4329 0.80 +1.2 137,625 - EX28DRAFT_4329 0.80 -0.4 137,807 - +0.6 137,807 - +0.0 137,900 + -0.6 137,900 + +0.3 137,900 + +0.3 137,903 + -0.1 137,903 + -0.1 137,903 + -0.3 137,904 - -0.1 137,904 - -0.9 137,904 - +0.4 137,904 - +0.0 137,904 - +0.1 137,904 - +0.6 137,906 + +1.5 137,906 + +1.4 137,907 - +2.1 137,907 - +0.6 137,907 - -0.0 137,907 - +0.5 137,918 + +0.1 137,959 + -0.1 137,960 - +1.4 138,154 - EX28DRAFT_4330 0.15 +0.3 138,195 - EX28DRAFT_4330 0.17 -0.1 138,198 + EX28DRAFT_4330 0.18 +0.4 138,198 + EX28DRAFT_4330 0.18 +0.1 138,199 - EX28DRAFT_4330 0.18 -1.7 138,199 - EX28DRAFT_4330 0.18 +0.9 138,202 + EX28DRAFT_4330 0.18 -0.4 138,202 + EX28DRAFT_4330 0.18 +0.2 138,236 + EX28DRAFT_4330 0.20 -3.6 138,237 - EX28DRAFT_4330 0.20 -0.6 138,671 + EX28DRAFT_4330 0.47 -0.0 138,682 - EX28DRAFT_4330 0.48 -0.5 138,884 + EX28DRAFT_4330 0.60 +0.3 138,923 + EX28DRAFT_4330 0.63 -0.8 139,018 + EX28DRAFT_4330 0.69 -0.3 139,019 - EX28DRAFT_4330 0.69 -0.0 139,080 + EX28DRAFT_4330 0.73 -0.4 139,083 - EX28DRAFT_4330 0.73 +0.4 139,383 + +0.6 139,384 - -0.3 139,384 - +1.0 139,386 + -0.0 139,470 - -0.9 139,520 - +0.2 139,580 + -0.3 139,581 - +0.3 139,600 + -0.1 139,790 + +0.8 139,844 + -0.2 139,847 + -2.1 139,848 - -2.1 139,861 - -0.4 139,932 - EX28DRAFT_4331 0.15 -0.8 139,938 - EX28DRAFT_4331 0.16 -0.6 139,938 - EX28DRAFT_4331 0.16 -0.8 139,938 - EX28DRAFT_4331 0.16 -2.7 139,943 - EX28DRAFT_4331 0.17 -2.2 139,953 + EX28DRAFT_4331 0.18 -0.8 139,953 + EX28DRAFT_4331 0.18 -2.3 140,060 + EX28DRAFT_4331 0.29 -4.4 140,060 + EX28DRAFT_4331 0.29 -1.6 140,061 - EX28DRAFT_4331 0.29 -1.0 140,061 - EX28DRAFT_4331 0.29 -6.7 140,105 + EX28DRAFT_4331 0.34 -2.6 140,216 + EX28DRAFT_4331 0.46 -3.9 140,314 - EX28DRAFT_4331 0.56 -0.2 140,453 + EX28DRAFT_4331 0.71 -3.0 140,454 - EX28DRAFT_4331 0.72 -1.7
Or see this region's nucleotide sequence