Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4318 and EX28DRAFT_4319 are separated by 374 nucleotides EX28DRAFT_4319 and EX28DRAFT_4320 are separated by 93 nucleotides EX28DRAFT_4320 and EX28DRAFT_4321 are separated by 50 nucleotides
EX28DRAFT_4318: EX28DRAFT_4318 - Glucose-6-phosphate isomerase, at 122,175 to 123,824
_4318
EX28DRAFT_4319: EX28DRAFT_4319 - aspartate kinase (EC 2.7.2.4), at 124,199 to 125,548
_4319
EX28DRAFT_4320: EX28DRAFT_4320 - Sodium Bile acid symporter family, at 125,642 to 126,313
_4320
EX28DRAFT_4321: EX28DRAFT_4321 - YjbD family (DUF3811), at 126,364 to 126,636
_4321
Position (kb) 124
125
126 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 123.832 kb on - strand at 123.901 kb on + strand at 123.902 kb on - strand at 123.952 kb on - strand at 123.953 kb on + strand at 124.004 kb on - strand at 124.016 kb on - strand at 124.033 kb on + strand at 124.034 kb on - strand at 124.034 kb on - strand at 124.034 kb on - strand at 124.115 kb on - strand at 124.117 kb on - strand at 124.248 kb on - strand at 124.480 kb on + strand, within EX28DRAFT_4319 at 124.628 kb on - strand, within EX28DRAFT_4319 at 124.805 kb on + strand, within EX28DRAFT_4319 at 125.149 kb on + strand, within EX28DRAFT_4319 at 125.149 kb on + strand, within EX28DRAFT_4319 at 125.149 kb on + strand, within EX28DRAFT_4319 at 125.206 kb on + strand, within EX28DRAFT_4319 at 125.471 kb on + strand at 125.571 kb on + strand at 125.571 kb on + strand at 125.571 kb on + strand at 125.575 kb on + strand at 125.575 kb on + strand at 125.575 kb on + strand at 125.576 kb on - strand at 125.578 kb on - strand at 125.609 kb on + strand at 125.609 kb on + strand at 125.609 kb on + strand at 125.609 kb on + strand at 125.609 kb on + strand at 125.609 kb on + strand at 125.610 kb on - strand at 125.624 kb on + strand at 125.702 kb on + strand at 125.706 kb on - strand at 125.856 kb on - strand, within EX28DRAFT_4320 at 125.856 kb on - strand, within EX28DRAFT_4320 at 126.046 kb on + strand, within EX28DRAFT_4320 at 126.046 kb on + strand, within EX28DRAFT_4320 at 126.047 kb on - strand, within EX28DRAFT_4320 at 126.047 kb on - strand, within EX28DRAFT_4320 at 126.047 kb on - strand, within EX28DRAFT_4320 at 126.047 kb on - strand, within EX28DRAFT_4320 at 126.053 kb on - strand, within EX28DRAFT_4320 at 126.053 kb on - strand, within EX28DRAFT_4320 at 126.106 kb on + strand, within EX28DRAFT_4320 at 126.107 kb on - strand, within EX28DRAFT_4320 at 126.132 kb on + strand, within EX28DRAFT_4320 at 126.169 kb on + strand, within EX28DRAFT_4320 at 126.255 kb on - strand at 126.311 kb on + strand at 126.499 kb on + strand, within EX28DRAFT_4321 at 126.500 kb on - strand, within EX28DRAFT_4321 at 126.508 kb on - strand, within EX28DRAFT_4321
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 123,832 - +0.5 123,901 + -0.0 123,902 - +0.3 123,952 - +0.4 123,953 + -0.5 124,004 - -0.2 124,016 - +0.7 124,033 + -0.3 124,034 - -1.4 124,034 - +0.2 124,034 - -1.0 124,115 - -1.5 124,117 - -1.3 124,248 - -1.2 124,480 + EX28DRAFT_4319 0.21 -2.6 124,628 - EX28DRAFT_4319 0.32 -1.4 124,805 + EX28DRAFT_4319 0.45 -1.6 125,149 + EX28DRAFT_4319 0.70 -2.1 125,149 + EX28DRAFT_4319 0.70 -0.7 125,149 + EX28DRAFT_4319 0.70 -0.7 125,206 + EX28DRAFT_4319 0.75 -1.9 125,471 + -1.2 125,571 + +0.2 125,571 + -2.2 125,571 + -0.7 125,575 + +0.0 125,575 + -0.3 125,575 + -0.3 125,576 - -0.4 125,578 - -1.5 125,609 + -0.2 125,609 + -0.2 125,609 + +0.4 125,609 + -0.1 125,609 + +0.1 125,609 + -0.0 125,610 - -1.6 125,624 + +0.3 125,702 + -1.4 125,706 - -2.3 125,856 - EX28DRAFT_4320 0.32 -1.3 125,856 - EX28DRAFT_4320 0.32 +0.0 126,046 + EX28DRAFT_4320 0.60 +0.2 126,046 + EX28DRAFT_4320 0.60 +0.6 126,047 - EX28DRAFT_4320 0.60 -0.1 126,047 - EX28DRAFT_4320 0.60 +0.5 126,047 - EX28DRAFT_4320 0.60 -0.3 126,047 - EX28DRAFT_4320 0.60 +1.1 126,053 - EX28DRAFT_4320 0.61 +0.8 126,053 - EX28DRAFT_4320 0.61 -3.3 126,106 + EX28DRAFT_4320 0.69 +0.4 126,107 - EX28DRAFT_4320 0.69 +0.4 126,132 + EX28DRAFT_4320 0.73 +0.1 126,169 + EX28DRAFT_4320 0.78 +0.7 126,255 - +0.1 126,311 + +0.0 126,499 + EX28DRAFT_4321 0.49 -0.7 126,500 - EX28DRAFT_4321 0.50 +0.3 126,508 - EX28DRAFT_4321 0.53 +0.1
Or see this region's nucleotide sequence