Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4316 and EX28DRAFT_4317 are separated by 63 nucleotides EX28DRAFT_4317 and EX28DRAFT_4318 are separated by 367 nucleotides EX28DRAFT_4318 and EX28DRAFT_4319 are separated by 374 nucleotides
EX28DRAFT_4316: EX28DRAFT_4316 - Group 4 capsule polysaccharide formation lipoprotein gfcB, at 120,863 to 121,501
_4316
EX28DRAFT_4317: EX28DRAFT_4317 - Exopolysaccharide production protein YjbE, at 121,565 to 121,807
_4317
EX28DRAFT_4318: EX28DRAFT_4318 - Glucose-6-phosphate isomerase, at 122,175 to 123,824
_4318
EX28DRAFT_4319: EX28DRAFT_4319 - aspartate kinase (EC 2.7.2.4), at 124,199 to 125,548
_4319
Position (kb)
122
123
124 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 121.344 kb on + strand, within EX28DRAFT_4316 at 121.345 kb on - strand, within EX28DRAFT_4316 at 121.345 kb on - strand, within EX28DRAFT_4316 at 121.356 kb on + strand, within EX28DRAFT_4316 at 121.356 kb on + strand, within EX28DRAFT_4316 at 121.391 kb on + strand, within EX28DRAFT_4316 at 121.392 kb on - strand, within EX28DRAFT_4316 at 121.392 kb on - strand, within EX28DRAFT_4316 at 121.441 kb on + strand at 121.526 kb on - strand at 121.796 kb on + strand at 121.881 kb on - strand at 122.172 kb on + strand at 122.176 kb on + strand at 122.659 kb on + strand, within EX28DRAFT_4318 at 122.717 kb on - strand, within EX28DRAFT_4318 at 122.746 kb on + strand, within EX28DRAFT_4318 at 122.747 kb on - strand, within EX28DRAFT_4318 at 122.801 kb on + strand, within EX28DRAFT_4318 at 122.802 kb on - strand, within EX28DRAFT_4318 at 122.802 kb on - strand, within EX28DRAFT_4318 at 123.832 kb on - strand at 123.901 kb on + strand at 123.902 kb on - strand at 123.952 kb on - strand at 123.953 kb on + strand at 124.004 kb on - strand at 124.016 kb on - strand at 124.033 kb on + strand at 124.034 kb on - strand at 124.034 kb on - strand at 124.034 kb on - strand at 124.115 kb on - strand at 124.117 kb on - strand at 124.248 kb on - strand at 124.480 kb on + strand, within EX28DRAFT_4319 at 124.628 kb on - strand, within EX28DRAFT_4319 at 124.805 kb on + strand, within EX28DRAFT_4319
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 121,344 + EX28DRAFT_4316 0.75 -0.5 121,345 - EX28DRAFT_4316 0.75 +2.4 121,345 - EX28DRAFT_4316 0.75 +0.3 121,356 + EX28DRAFT_4316 0.77 -0.0 121,356 + EX28DRAFT_4316 0.77 -0.3 121,391 + EX28DRAFT_4316 0.83 -2.2 121,392 - EX28DRAFT_4316 0.83 +0.2 121,392 - EX28DRAFT_4316 0.83 +0.0 121,441 + -0.1 121,526 - +0.5 121,796 + +0.0 121,881 - -0.2 122,172 + -0.7 122,176 + -0.1 122,659 + EX28DRAFT_4318 0.29 -2.0 122,717 - EX28DRAFT_4318 0.33 -2.4 122,746 + EX28DRAFT_4318 0.35 -1.0 122,747 - EX28DRAFT_4318 0.35 -0.9 122,801 + EX28DRAFT_4318 0.38 -4.2 122,802 - EX28DRAFT_4318 0.38 -1.5 122,802 - EX28DRAFT_4318 0.38 -0.3 123,832 - +0.5 123,901 + -0.0 123,902 - +0.3 123,952 - +0.4 123,953 + -0.5 124,004 - -0.2 124,016 - +0.7 124,033 + -0.3 124,034 - -1.4 124,034 - +0.2 124,034 - -1.0 124,115 - -1.5 124,117 - -1.3 124,248 - -1.2 124,480 + EX28DRAFT_4319 0.21 -2.6 124,628 - EX28DRAFT_4319 0.32 -1.4 124,805 + EX28DRAFT_4319 0.45 -1.6
Or see this region's nucleotide sequence