Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4293 and EX28DRAFT_4294 are separated by 203 nucleotides EX28DRAFT_4294 and EX28DRAFT_4295 are separated by 136 nucleotides
EX28DRAFT_4293: EX28DRAFT_4293 - ABC-type branched-chain amino acid transport systems, periplasmic component, at 96,151 to 97,245
_4293
EX28DRAFT_4294: EX28DRAFT_4294 - 4-aminobutyrate aminotransferase, prokaryotic type, at 97,449 to 98,714
_4294
EX28DRAFT_4295: EX28DRAFT_4295 - alternative sigma factor RpoH, at 98,851 to 99,708
_4295
Position (kb) 97
98
99 Strain fitness (log2 ratio) -2
-1
0
1
2 at 96.590 kb on + strand, within EX28DRAFT_4293 at 96.738 kb on - strand, within EX28DRAFT_4293 at 96.795 kb on - strand, within EX28DRAFT_4293 at 96.907 kb on - strand, within EX28DRAFT_4293 at 96.920 kb on + strand, within EX28DRAFT_4293 at 96.920 kb on + strand, within EX28DRAFT_4293 at 96.921 kb on - strand, within EX28DRAFT_4293 at 96.971 kb on + strand, within EX28DRAFT_4293 at 96.971 kb on + strand, within EX28DRAFT_4293 at 96.971 kb on + strand, within EX28DRAFT_4293 at 96.972 kb on - strand, within EX28DRAFT_4293 at 96.972 kb on - strand, within EX28DRAFT_4293 at 97.041 kb on - strand, within EX28DRAFT_4293 at 97.080 kb on + strand, within EX28DRAFT_4293 at 97.080 kb on + strand, within EX28DRAFT_4293 at 97.087 kb on - strand, within EX28DRAFT_4293 at 97.215 kb on + strand at 97.216 kb on - strand at 97.279 kb on + strand at 97.280 kb on - strand at 97.407 kb on + strand at 97.409 kb on + strand at 97.409 kb on + strand at 97.409 kb on + strand at 97.409 kb on + strand at 97.410 kb on - strand at 97.410 kb on - strand at 97.415 kb on - strand at 97.451 kb on - strand at 97.473 kb on - strand at 97.687 kb on + strand, within EX28DRAFT_4294 at 97.689 kb on - strand, within EX28DRAFT_4294 at 97.825 kb on + strand, within EX28DRAFT_4294 at 97.825 kb on + strand, within EX28DRAFT_4294 at 98.055 kb on - strand, within EX28DRAFT_4294 at 98.145 kb on - strand, within EX28DRAFT_4294 at 98.218 kb on + strand, within EX28DRAFT_4294 at 98.218 kb on + strand, within EX28DRAFT_4294 at 98.254 kb on + strand, within EX28DRAFT_4294 at 98.289 kb on - strand, within EX28DRAFT_4294 at 98.461 kb on + strand, within EX28DRAFT_4294 at 98.462 kb on - strand, within EX28DRAFT_4294 at 98.462 kb on - strand, within EX28DRAFT_4294 at 98.470 kb on + strand, within EX28DRAFT_4294 at 98.470 kb on + strand, within EX28DRAFT_4294 at 98.493 kb on - strand, within EX28DRAFT_4294 at 98.590 kb on + strand at 98.641 kb on + strand at 98.641 kb on + strand at 98.641 kb on + strand at 98.648 kb on + strand at 98.649 kb on - strand at 98.753 kb on + strand at 98.754 kb on - strand at 98.754 kb on - strand at 98.754 kb on - strand at 98.852 kb on + strand at 98.852 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 96,590 + EX28DRAFT_4293 0.40 +1.5 96,738 - EX28DRAFT_4293 0.54 +1.2 96,795 - EX28DRAFT_4293 0.59 +1.9 96,907 - EX28DRAFT_4293 0.69 +1.2 96,920 + EX28DRAFT_4293 0.70 +0.6 96,920 + EX28DRAFT_4293 0.70 +0.9 96,921 - EX28DRAFT_4293 0.70 +1.3 96,971 + EX28DRAFT_4293 0.75 +1.6 96,971 + EX28DRAFT_4293 0.75 +1.3 96,971 + EX28DRAFT_4293 0.75 +1.3 96,972 - EX28DRAFT_4293 0.75 +1.1 96,972 - EX28DRAFT_4293 0.75 +1.4 97,041 - EX28DRAFT_4293 0.81 +1.3 97,080 + EX28DRAFT_4293 0.85 +0.9 97,080 + EX28DRAFT_4293 0.85 +1.1 97,087 - EX28DRAFT_4293 0.85 +0.0 97,215 + -0.0 97,216 - +1.6 97,279 + +1.5 97,280 - -0.7 97,407 + +0.1 97,409 + -0.3 97,409 + +0.0 97,409 + +0.3 97,409 + +1.2 97,410 - +0.1 97,410 - -0.2 97,415 - -0.8 97,451 - +0.1 97,473 - +0.8 97,687 + EX28DRAFT_4294 0.19 -0.2 97,689 - EX28DRAFT_4294 0.19 -0.4 97,825 + EX28DRAFT_4294 0.30 +0.1 97,825 + EX28DRAFT_4294 0.30 -0.9 98,055 - EX28DRAFT_4294 0.48 +0.5 98,145 - EX28DRAFT_4294 0.55 -0.1 98,218 + EX28DRAFT_4294 0.61 -0.4 98,218 + EX28DRAFT_4294 0.61 -2.7 98,254 + EX28DRAFT_4294 0.64 -0.6 98,289 - EX28DRAFT_4294 0.66 +0.4 98,461 + EX28DRAFT_4294 0.80 +0.2 98,462 - EX28DRAFT_4294 0.80 +0.7 98,462 - EX28DRAFT_4294 0.80 -0.2 98,470 + EX28DRAFT_4294 0.81 -0.1 98,470 + EX28DRAFT_4294 0.81 +1.4 98,493 - EX28DRAFT_4294 0.82 +0.3 98,590 + +0.1 98,641 + +0.4 98,641 + -2.1 98,641 + -0.2 98,648 + -0.9 98,649 - +0.6 98,753 + -0.1 98,754 - -0.1 98,754 - +0.5 98,754 - +0.2 98,852 + -0.2 98,852 + +0.1
Or see this region's nucleotide sequence