Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4241 and EX28DRAFT_4242 are separated by 98 nucleotides EX28DRAFT_4242 and EX28DRAFT_4243 are separated by 6 nucleotides EX28DRAFT_4243 and EX28DRAFT_4244 are separated by 646 nucleotides EX28DRAFT_4244 and EX28DRAFT_4245 are separated by 61 nucleotides
EX28DRAFT_4241: EX28DRAFT_4241 - redox-sensitive transcriptional activator SoxR, at 48,356 to 48,814
_4241
EX28DRAFT_4242: EX28DRAFT_4242 - AraC-type DNA-binding domain-containing proteins, at 48,913 to 49,239
_4242
EX28DRAFT_4243: EX28DRAFT_4243 - Predicted signal transduction protein containing sensor and EAL domains, at 49,246 to 50,811
_4243
EX28DRAFT_4244: EX28DRAFT_4244 - hypothetical protein, at 51,458 to 51,739
_4244
EX28DRAFT_4245: EX28DRAFT_4245 - single stranded DNA-binding protein (ssb), at 51,801 to 52,331
_4245
Position (kb)
49
50
51 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 48.268 kb on + strand at 48.269 kb on - strand at 48.308 kb on + strand at 48.320 kb on + strand at 48.321 kb on - strand at 48.321 kb on - strand at 48.321 kb on - strand at 48.328 kb on + strand at 48.328 kb on + strand at 48.328 kb on + strand at 48.329 kb on - strand at 48.331 kb on - strand at 48.331 kb on - strand at 48.457 kb on + strand, within EX28DRAFT_4241 at 48.458 kb on - strand, within EX28DRAFT_4241 at 48.493 kb on + strand, within EX28DRAFT_4241 at 48.494 kb on - strand, within EX28DRAFT_4241 at 48.499 kb on + strand, within EX28DRAFT_4241 at 48.703 kb on + strand, within EX28DRAFT_4241 at 48.703 kb on + strand, within EX28DRAFT_4241 at 48.704 kb on - strand, within EX28DRAFT_4241 at 48.724 kb on - strand, within EX28DRAFT_4241 at 48.790 kb on + strand at 48.836 kb on - strand at 48.878 kb on - strand at 48.886 kb on + strand at 48.887 kb on - strand at 48.892 kb on + strand at 48.892 kb on + strand at 48.897 kb on - strand at 48.912 kb on + strand at 48.912 kb on + strand at 48.912 kb on + strand at 48.913 kb on - strand at 48.930 kb on + strand at 48.943 kb on - strand at 48.964 kb on - strand, within EX28DRAFT_4242 at 48.964 kb on - strand, within EX28DRAFT_4242 at 48.996 kb on + strand, within EX28DRAFT_4242 at 49.022 kb on - strand, within EX28DRAFT_4242 at 49.022 kb on - strand, within EX28DRAFT_4242 at 49.022 kb on - strand, within EX28DRAFT_4242 at 49.022 kb on - strand, within EX28DRAFT_4242 at 49.157 kb on - strand, within EX28DRAFT_4242 at 49.369 kb on + strand at 49.419 kb on + strand, within EX28DRAFT_4243 at 49.419 kb on + strand, within EX28DRAFT_4243 at 49.636 kb on + strand, within EX28DRAFT_4243 at 49.637 kb on - strand, within EX28DRAFT_4243 at 49.637 kb on - strand, within EX28DRAFT_4243 at 49.741 kb on - strand, within EX28DRAFT_4243 at 49.741 kb on - strand, within EX28DRAFT_4243 at 49.742 kb on + strand, within EX28DRAFT_4243 at 49.742 kb on + strand, within EX28DRAFT_4243 at 49.743 kb on - strand, within EX28DRAFT_4243 at 49.802 kb on + strand, within EX28DRAFT_4243 at 49.803 kb on - strand, within EX28DRAFT_4243 at 49.803 kb on - strand, within EX28DRAFT_4243 at 49.803 kb on - strand, within EX28DRAFT_4243 at 49.803 kb on - strand, within EX28DRAFT_4243 at 49.803 kb on - strand, within EX28DRAFT_4243 at 49.803 kb on - strand, within EX28DRAFT_4243 at 49.803 kb on - strand, within EX28DRAFT_4243 at 49.930 kb on - strand, within EX28DRAFT_4243 at 49.930 kb on - strand, within EX28DRAFT_4243 at 49.939 kb on - strand, within EX28DRAFT_4243 at 50.043 kb on + strand, within EX28DRAFT_4243 at 50.044 kb on - strand, within EX28DRAFT_4243 at 50.163 kb on - strand, within EX28DRAFT_4243 at 50.172 kb on - strand, within EX28DRAFT_4243 at 50.282 kb on + strand, within EX28DRAFT_4243 at 50.283 kb on - strand, within EX28DRAFT_4243 at 50.371 kb on - strand, within EX28DRAFT_4243 at 50.371 kb on - strand, within EX28DRAFT_4243 at 50.372 kb on + strand, within EX28DRAFT_4243 at 50.372 kb on + strand, within EX28DRAFT_4243 at 50.373 kb on - strand, within EX28DRAFT_4243 at 50.373 kb on - strand, within EX28DRAFT_4243 at 50.383 kb on - strand, within EX28DRAFT_4243 at 50.384 kb on + strand, within EX28DRAFT_4243 at 50.445 kb on - strand, within EX28DRAFT_4243 at 50.565 kb on + strand, within EX28DRAFT_4243 at 50.565 kb on + strand, within EX28DRAFT_4243 at 50.565 kb on + strand, within EX28DRAFT_4243 at 50.567 kb on + strand, within EX28DRAFT_4243 at 50.568 kb on - strand, within EX28DRAFT_4243 at 50.568 kb on - strand, within EX28DRAFT_4243 at 50.568 kb on - strand, within EX28DRAFT_4243 at 50.568 kb on - strand, within EX28DRAFT_4243 at 50.687 kb on - strand at 50.754 kb on + strand at 50.754 kb on + strand at 50.755 kb on - strand at 50.758 kb on + strand at 50.758 kb on + strand at 50.758 kb on + strand at 50.759 kb on - strand at 50.759 kb on - strand at 50.759 kb on - strand at 50.759 kb on - strand at 50.774 kb on - strand at 50.821 kb on + strand at 50.846 kb on + strand at 50.849 kb on + strand at 50.922 kb on - strand at 50.925 kb on - strand at 51.097 kb on - strand at 51.331 kb on + strand at 51.673 kb on + strand, within EX28DRAFT_4244 at 51.673 kb on + strand, within EX28DRAFT_4244 at 51.674 kb on - strand, within EX28DRAFT_4244 at 51.733 kb on + strand at 51.734 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 48,268 + +0.4 48,269 - -0.8 48,308 + -0.6 48,320 + +0.3 48,321 - -1.2 48,321 - -1.7 48,321 - +0.3 48,328 + +0.3 48,328 + -0.1 48,328 + -0.1 48,329 - -2.1 48,331 - -0.0 48,331 - -0.7 48,457 + EX28DRAFT_4241 0.22 -0.1 48,458 - EX28DRAFT_4241 0.22 -0.1 48,493 + EX28DRAFT_4241 0.30 +0.1 48,494 - EX28DRAFT_4241 0.30 +0.1 48,499 + EX28DRAFT_4241 0.31 +0.1 48,703 + EX28DRAFT_4241 0.76 +0.3 48,703 + EX28DRAFT_4241 0.76 +0.2 48,704 - EX28DRAFT_4241 0.76 -1.6 48,724 - EX28DRAFT_4241 0.80 +0.3 48,790 + -0.4 48,836 - -0.1 48,878 - +0.5 48,886 + -0.3 48,887 - +0.2 48,892 + -0.5 48,892 + +0.5 48,897 - -0.2 48,912 + -0.1 48,912 + -0.7 48,912 + +0.2 48,913 - -0.3 48,930 + +0.4 48,943 - +0.3 48,964 - EX28DRAFT_4242 0.16 -0.6 48,964 - EX28DRAFT_4242 0.16 +0.2 48,996 + EX28DRAFT_4242 0.25 +0.2 49,022 - EX28DRAFT_4242 0.33 -0.5 49,022 - EX28DRAFT_4242 0.33 +0.4 49,022 - EX28DRAFT_4242 0.33 -0.6 49,022 - EX28DRAFT_4242 0.33 +0.0 49,157 - EX28DRAFT_4242 0.75 +0.4 49,369 + -0.3 49,419 + EX28DRAFT_4243 0.11 +0.0 49,419 + EX28DRAFT_4243 0.11 -3.0 49,636 + EX28DRAFT_4243 0.25 -1.6 49,637 - EX28DRAFT_4243 0.25 -0.5 49,637 - EX28DRAFT_4243 0.25 -0.3 49,741 - EX28DRAFT_4243 0.32 -2.0 49,741 - EX28DRAFT_4243 0.32 -0.2 49,742 + EX28DRAFT_4243 0.32 -1.0 49,742 + EX28DRAFT_4243 0.32 +0.8 49,743 - EX28DRAFT_4243 0.32 +0.3 49,802 + EX28DRAFT_4243 0.36 +1.7 49,803 - EX28DRAFT_4243 0.36 -0.2 49,803 - EX28DRAFT_4243 0.36 +0.0 49,803 - EX28DRAFT_4243 0.36 -0.2 49,803 - EX28DRAFT_4243 0.36 -0.8 49,803 - EX28DRAFT_4243 0.36 -0.6 49,803 - EX28DRAFT_4243 0.36 +1.5 49,803 - EX28DRAFT_4243 0.36 -0.1 49,930 - EX28DRAFT_4243 0.44 +0.2 49,930 - EX28DRAFT_4243 0.44 -0.4 49,939 - EX28DRAFT_4243 0.44 -0.2 50,043 + EX28DRAFT_4243 0.51 -0.3 50,044 - EX28DRAFT_4243 0.51 +1.3 50,163 - EX28DRAFT_4243 0.59 -1.1 50,172 - EX28DRAFT_4243 0.59 -1.1 50,282 + EX28DRAFT_4243 0.66 +0.8 50,283 - EX28DRAFT_4243 0.66 -1.2 50,371 - EX28DRAFT_4243 0.72 +0.2 50,371 - EX28DRAFT_4243 0.72 -0.4 50,372 + EX28DRAFT_4243 0.72 +0.2 50,372 + EX28DRAFT_4243 0.72 -2.6 50,373 - EX28DRAFT_4243 0.72 +0.1 50,373 - EX28DRAFT_4243 0.72 -0.1 50,383 - EX28DRAFT_4243 0.73 +0.0 50,384 + EX28DRAFT_4243 0.73 -0.1 50,445 - EX28DRAFT_4243 0.77 -0.1 50,565 + EX28DRAFT_4243 0.84 -0.2 50,565 + EX28DRAFT_4243 0.84 -0.5 50,565 + EX28DRAFT_4243 0.84 -0.5 50,567 + EX28DRAFT_4243 0.84 -1.0 50,568 - EX28DRAFT_4243 0.84 +0.2 50,568 - EX28DRAFT_4243 0.84 -2.2 50,568 - EX28DRAFT_4243 0.84 +0.1 50,568 - EX28DRAFT_4243 0.84 +0.5 50,687 - -2.7 50,754 + -0.4 50,754 + -0.6 50,755 - -0.4 50,758 + -0.3 50,758 + +0.1 50,758 + +0.6 50,759 - +0.7 50,759 - -0.6 50,759 - +0.1 50,759 - -0.1 50,774 - -1.3 50,821 + +0.4 50,846 + -0.1 50,849 + +0.3 50,922 - +0.1 50,925 - -2.6 51,097 - +0.0 51,331 + -0.0 51,673 + EX28DRAFT_4244 0.76 +2.1 51,673 + EX28DRAFT_4244 0.76 +0.4 51,674 - EX28DRAFT_4244 0.77 +0.2 51,733 + -3.9 51,734 - -0.4
Or see this region's nucleotide sequence