Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4223 and EX28DRAFT_4224 overlap by 1 nucleotides EX28DRAFT_4224 and EX28DRAFT_4225 are separated by 2 nucleotides EX28DRAFT_4225 and EX28DRAFT_4226 are separated by 256 nucleotides
EX28DRAFT_4223: EX28DRAFT_4223 - hypothetical protein, at 29,735 to 30,949
_4223
EX28DRAFT_4224: EX28DRAFT_4224 - Predicted double-glycine peptidase, at 30,949 to 31,476
_4224
EX28DRAFT_4225: EX28DRAFT_4225 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 31,479 to 32,210
_4225
EX28DRAFT_4226: EX28DRAFT_4226 - formate dehydrogenase alpha subunit (EC 1.2.1.2), at 32,467 to 34,614
_4226
Position (kb) 30
31
32 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 29.984 kb on - strand, within EX28DRAFT_4223 at 30.097 kb on + strand, within EX28DRAFT_4223 at 30.102 kb on + strand, within EX28DRAFT_4223 at 30.103 kb on - strand, within EX28DRAFT_4223 at 30.340 kb on - strand, within EX28DRAFT_4223 at 30.421 kb on - strand, within EX28DRAFT_4223 at 30.496 kb on + strand, within EX28DRAFT_4223 at 30.519 kb on - strand, within EX28DRAFT_4223 at 30.519 kb on - strand, within EX28DRAFT_4223 at 30.557 kb on - strand, within EX28DRAFT_4223 at 30.734 kb on - strand, within EX28DRAFT_4223 at 30.764 kb on + strand, within EX28DRAFT_4223 at 30.764 kb on + strand, within EX28DRAFT_4223 at 30.765 kb on - strand, within EX28DRAFT_4223 at 30.765 kb on - strand, within EX28DRAFT_4223 at 30.765 kb on - strand, within EX28DRAFT_4223 at 30.765 kb on - strand, within EX28DRAFT_4223 at 30.765 kb on - strand, within EX28DRAFT_4223 at 30.766 kb on + strand, within EX28DRAFT_4223 at 30.767 kb on - strand, within EX28DRAFT_4223 at 30.779 kb on - strand, within EX28DRAFT_4223 at 30.782 kb on - strand, within EX28DRAFT_4223 at 30.788 kb on + strand, within EX28DRAFT_4223 at 30.878 kb on - strand at 30.971 kb on + strand at 30.971 kb on + strand at 30.977 kb on + strand at 31.001 kb on - strand at 31.100 kb on + strand, within EX28DRAFT_4224 at 31.100 kb on + strand, within EX28DRAFT_4224 at 31.152 kb on + strand, within EX28DRAFT_4224 at 31.327 kb on + strand, within EX28DRAFT_4224 at 31.359 kb on + strand, within EX28DRAFT_4224 at 31.475 kb on + strand at 31.477 kb on + strand at 31.478 kb on - strand at 31.478 kb on - strand at 31.478 kb on - strand at 31.480 kb on + strand at 31.481 kb on - strand at 31.481 kb on - strand at 31.523 kb on - strand at 31.715 kb on - strand, within EX28DRAFT_4225 at 31.910 kb on - strand, within EX28DRAFT_4225 at 31.910 kb on - strand, within EX28DRAFT_4225 at 32.048 kb on + strand, within EX28DRAFT_4225 at 32.187 kb on + strand at 32.187 kb on + strand at 32.187 kb on + strand at 32.187 kb on + strand at 32.188 kb on - strand at 32.188 kb on - strand at 32.188 kb on - strand at 32.232 kb on + strand at 32.233 kb on - strand at 32.395 kb on - strand at 32.429 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 29,984 - EX28DRAFT_4223 0.20 +2.6 30,097 + EX28DRAFT_4223 0.30 +0.3 30,102 + EX28DRAFT_4223 0.30 +0.3 30,103 - EX28DRAFT_4223 0.30 +0.2 30,340 - EX28DRAFT_4223 0.50 +0.9 30,421 - EX28DRAFT_4223 0.56 -0.3 30,496 + EX28DRAFT_4223 0.63 +0.1 30,519 - EX28DRAFT_4223 0.65 -1.0 30,519 - EX28DRAFT_4223 0.65 +0.4 30,557 - EX28DRAFT_4223 0.68 +0.3 30,734 - EX28DRAFT_4223 0.82 +0.1 30,764 + EX28DRAFT_4223 0.85 +0.3 30,764 + EX28DRAFT_4223 0.85 -1.4 30,765 - EX28DRAFT_4223 0.85 +0.3 30,765 - EX28DRAFT_4223 0.85 -0.0 30,765 - EX28DRAFT_4223 0.85 -1.1 30,765 - EX28DRAFT_4223 0.85 +0.2 30,765 - EX28DRAFT_4223 0.85 -0.6 30,766 + EX28DRAFT_4223 0.85 -0.1 30,767 - EX28DRAFT_4223 0.85 +0.3 30,779 - EX28DRAFT_4223 0.86 -1.4 30,782 - EX28DRAFT_4223 0.86 -0.1 30,788 + EX28DRAFT_4223 0.87 -1.5 30,878 - -0.5 30,971 + +0.0 30,971 + -1.0 30,977 + -0.6 31,001 - -0.5 31,100 + EX28DRAFT_4224 0.29 +1.2 31,100 + EX28DRAFT_4224 0.29 +0.3 31,152 + EX28DRAFT_4224 0.38 +0.5 31,327 + EX28DRAFT_4224 0.72 +0.6 31,359 + EX28DRAFT_4224 0.78 -0.3 31,475 + -0.1 31,477 + -0.2 31,478 - +0.3 31,478 - -3.3 31,478 - -0.9 31,480 + -1.7 31,481 - +0.5 31,481 - +0.9 31,523 - -0.1 31,715 - EX28DRAFT_4225 0.32 -0.1 31,910 - EX28DRAFT_4225 0.59 +0.8 31,910 - EX28DRAFT_4225 0.59 -0.3 32,048 + EX28DRAFT_4225 0.78 +0.1 32,187 + +0.4 32,187 + +0.2 32,187 + -0.1 32,187 + -0.6 32,188 - +0.4 32,188 - -0.0 32,188 - -0.1 32,232 + +0.6 32,233 - -0.5 32,395 - -0.3 32,429 + -0.1
Or see this region's nucleotide sequence