Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4210 and EX28DRAFT_4211 overlap by 1 nucleotides EX28DRAFT_4211 and EX28DRAFT_4212 overlap by 8 nucleotides EX28DRAFT_4212 and EX28DRAFT_4213 are separated by 9 nucleotides EX28DRAFT_4213 and EX28DRAFT_4214 are separated by 58 nucleotides EX28DRAFT_4214 and EX28DRAFT_4215 are separated by 69 nucleotides
EX28DRAFT_4210: EX28DRAFT_4210 - phosphonate metabolism protein PhnM, at 16,997 to 18,133
_4210
EX28DRAFT_4211: EX28DRAFT_4211 - phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN, at 18,133 to 18,681
_4211
EX28DRAFT_4212: EX28DRAFT_4212 - Acetyltransferase (GNAT) family, at 18,674 to 19,108
_4212
EX28DRAFT_4213: EX28DRAFT_4213 - phosphonate metabolism protein PhnP, at 19,118 to 19,876
_4213
EX28DRAFT_4214: EX28DRAFT_4214 - hypothetical protein, at 19,935 to 20,258
_4214
EX28DRAFT_4215: EX28DRAFT_4215 - Response regulator receiver domain/HAMP domain/Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase, at 20,328 to 22,610
_4215
Position (kb) 19
20 Strain fitness (log2 ratio) -2
-1
0
1 at 18.238 kb on + strand, within EX28DRAFT_4211 at 18.239 kb on - strand, within EX28DRAFT_4211 at 18.239 kb on - strand, within EX28DRAFT_4211 at 18.242 kb on + strand, within EX28DRAFT_4211 at 18.356 kb on - strand, within EX28DRAFT_4211 at 18.455 kb on - strand, within EX28DRAFT_4211 at 18.623 kb on + strand, within EX28DRAFT_4211 at 18.623 kb on + strand, within EX28DRAFT_4211 at 18.636 kb on + strand at 18.726 kb on - strand, within EX28DRAFT_4212 at 19.071 kb on - strand at 19.106 kb on + strand at 19.118 kb on - strand at 19.118 kb on - strand at 19.221 kb on - strand, within EX28DRAFT_4213 at 19.668 kb on + strand, within EX28DRAFT_4213 at 19.725 kb on + strand, within EX28DRAFT_4213 at 19.726 kb on - strand, within EX28DRAFT_4213 at 19.726 kb on - strand, within EX28DRAFT_4213 at 19.726 kb on - strand, within EX28DRAFT_4213 at 19.726 kb on - strand, within EX28DRAFT_4213 at 19.726 kb on - strand, within EX28DRAFT_4213 at 19.729 kb on + strand, within EX28DRAFT_4213 at 19.836 kb on + strand at 19.836 kb on + strand at 19.836 kb on + strand at 19.837 kb on - strand at 19.837 kb on - strand at 20.140 kb on + strand, within EX28DRAFT_4214 at 20.140 kb on + strand, within EX28DRAFT_4214 at 20.141 kb on - strand, within EX28DRAFT_4214 at 20.141 kb on - strand, within EX28DRAFT_4214 at 20.141 kb on - strand, within EX28DRAFT_4214 at 20.189 kb on + strand, within EX28DRAFT_4214 at 20.282 kb on - strand at 20.292 kb on + strand at 20.391 kb on + strand at 20.392 kb on - strand at 20.538 kb on - strand at 20.571 kb on - strand, within EX28DRAFT_4215 at 20.571 kb on - strand, within EX28DRAFT_4215 at 20.571 kb on - strand, within EX28DRAFT_4215
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 18,238 + EX28DRAFT_4211 0.19 +0.2 18,239 - EX28DRAFT_4211 0.19 -0.3 18,239 - EX28DRAFT_4211 0.19 -0.2 18,242 + EX28DRAFT_4211 0.20 -0.5 18,356 - EX28DRAFT_4211 0.41 +1.0 18,455 - EX28DRAFT_4211 0.59 +0.1 18,623 + EX28DRAFT_4211 0.89 +0.3 18,623 + EX28DRAFT_4211 0.89 +0.6 18,636 + +0.6 18,726 - EX28DRAFT_4212 0.12 -0.5 19,071 - -0.4 19,106 + +0.1 19,118 - -0.8 19,118 - +0.1 19,221 - EX28DRAFT_4213 0.14 +1.2 19,668 + EX28DRAFT_4213 0.72 +0.2 19,725 + EX28DRAFT_4213 0.80 +1.0 19,726 - EX28DRAFT_4213 0.80 +0.2 19,726 - EX28DRAFT_4213 0.80 +0.4 19,726 - EX28DRAFT_4213 0.80 +1.1 19,726 - EX28DRAFT_4213 0.80 -0.3 19,726 - EX28DRAFT_4213 0.80 +0.5 19,729 + EX28DRAFT_4213 0.81 -2.2 19,836 + +0.3 19,836 + +1.0 19,836 + -0.2 19,837 - -0.0 19,837 - -0.5 20,140 + EX28DRAFT_4214 0.63 +0.4 20,140 + EX28DRAFT_4214 0.63 -0.1 20,141 - EX28DRAFT_4214 0.64 +0.6 20,141 - EX28DRAFT_4214 0.64 +0.2 20,141 - EX28DRAFT_4214 0.64 +0.6 20,189 + EX28DRAFT_4214 0.78 -0.2 20,282 - -0.0 20,292 + -0.8 20,391 + -0.6 20,392 - -0.6 20,538 - +0.4 20,571 - EX28DRAFT_4215 0.11 -2.2 20,571 - EX28DRAFT_4215 0.11 -2.1 20,571 - EX28DRAFT_4215 0.11 +0.0
Or see this region's nucleotide sequence