Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4201 and EX28DRAFT_4202 are separated by 50 nucleotides EX28DRAFT_4202 and EX28DRAFT_4203 are separated by 20 nucleotides EX28DRAFT_4203 and EX28DRAFT_4204 are separated by 0 nucleotides EX28DRAFT_4204 and EX28DRAFT_4205 overlap by 4 nucleotides
EX28DRAFT_4201: EX28DRAFT_4201 - phosphonate ABC transporter, periplasmic phosphonate binding protein, at 10,030 to 11,046
_4201
EX28DRAFT_4202: EX28DRAFT_4202 - phosphonate ABC transporter, permease protein PhnE, at 11,097 to 11,876
_4202
EX28DRAFT_4203: EX28DRAFT_4203 - phosphonates metabolism transcriptional regulator PhnF, at 11,897 to 12,622
_4203
EX28DRAFT_4204: EX28DRAFT_4204 - phosphonate C-P lyase system protein PhnG, at 12,623 to 13,075
_4204
EX28DRAFT_4205: EX28DRAFT_4205 - phosphonate C-P lyase system protein PhnH, at 13,072 to 13,656
_4205
Position (kb) 11
12
13 Strain fitness (log2 ratio) -2
-1
0
1 at 11.032 kb on - strand at 11.044 kb on + strand at 11.044 kb on + strand at 11.085 kb on + strand at 11.146 kb on + strand at 11.147 kb on - strand at 11.178 kb on - strand, within EX28DRAFT_4202 at 11.178 kb on - strand, within EX28DRAFT_4202 at 11.290 kb on - strand, within EX28DRAFT_4202 at 11.405 kb on - strand, within EX28DRAFT_4202 at 11.406 kb on + strand, within EX28DRAFT_4202 at 11.623 kb on + strand, within EX28DRAFT_4202 at 11.623 kb on + strand, within EX28DRAFT_4202 at 11.624 kb on - strand, within EX28DRAFT_4202 at 11.658 kb on - strand, within EX28DRAFT_4202 at 12.334 kb on - strand, within EX28DRAFT_4203 at 12.342 kb on - strand, within EX28DRAFT_4203 at 12.569 kb on + strand at 12.869 kb on + strand, within EX28DRAFT_4204 at 12.870 kb on - strand, within EX28DRAFT_4204 at 12.941 kb on + strand, within EX28DRAFT_4204 at 12.942 kb on - strand, within EX28DRAFT_4204 at 13.388 kb on + strand, within EX28DRAFT_4205 at 13.389 kb on - strand, within EX28DRAFT_4205 at 13.389 kb on - strand, within EX28DRAFT_4205 at 13.389 kb on - strand, within EX28DRAFT_4205
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 11,032 - +0.5 11,044 + +0.0 11,044 + +1.4 11,085 + -1.8 11,146 + -0.0 11,147 - +0.8 11,178 - EX28DRAFT_4202 0.10 +0.0 11,178 - EX28DRAFT_4202 0.10 -1.8 11,290 - EX28DRAFT_4202 0.25 -0.4 11,405 - EX28DRAFT_4202 0.39 +0.6 11,406 + EX28DRAFT_4202 0.40 +0.7 11,623 + EX28DRAFT_4202 0.67 -0.8 11,623 + EX28DRAFT_4202 0.67 -0.4 11,624 - EX28DRAFT_4202 0.68 +0.3 11,658 - EX28DRAFT_4202 0.72 -0.1 12,334 - EX28DRAFT_4203 0.60 -2.0 12,342 - EX28DRAFT_4203 0.61 +0.0 12,569 + +0.5 12,869 + EX28DRAFT_4204 0.54 +0.2 12,870 - EX28DRAFT_4204 0.55 +0.6 12,941 + EX28DRAFT_4204 0.70 +0.4 12,942 - EX28DRAFT_4204 0.70 -0.2 13,388 + EX28DRAFT_4205 0.54 -0.1 13,389 - EX28DRAFT_4205 0.54 -0.1 13,389 - EX28DRAFT_4205 0.54 -0.1 13,389 - EX28DRAFT_4205 0.54 +0.0
Or see this region's nucleotide sequence