Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4170

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4168 and EX28DRAFT_4169 are separated by 21 nucleotidesEX28DRAFT_4169 and EX28DRAFT_4170 are separated by 86 nucleotidesEX28DRAFT_4170 and EX28DRAFT_4171 overlap by 4 nucleotides EX28DRAFT_4168: EX28DRAFT_4168 - SIR2-like domain, at 149,144 to 152,260 _4168 EX28DRAFT_4169: EX28DRAFT_4169 - glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase, at 152,282 to 152,845 _4169 EX28DRAFT_4170: EX28DRAFT_4170 - transaminase, acetylornithine/succinylornithine family/succinylornithine transaminase family, at 152,932 to 154,152 _4170 EX28DRAFT_4171: EX28DRAFT_4171 - integral membrane protein, YccS/YhfK family, at 154,149 to 156,236 _4171 Position (kb) 152 153 154 155Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 151.934 kb on - strand, within EX28DRAFT_4168at 151.942 kb on + strand, within EX28DRAFT_4168at 151.942 kb on + strand, within EX28DRAFT_4168at 152.007 kb on + strandat 152.010 kb on + strandat 152.042 kb on + strandat 152.043 kb on - strandat 152.044 kb on + strandat 152.064 kb on + strandat 152.064 kb on + strandat 152.065 kb on - strandat 152.065 kb on - strandat 152.076 kb on + strandat 152.076 kb on + strandat 152.098 kb on - strandat 152.218 kb on + strandat 152.219 kb on - strandat 152.227 kb on + strandat 152.240 kb on + strandat 152.254 kb on + strandat 152.254 kb on + strandat 152.255 kb on - strandat 152.278 kb on + strandat 152.278 kb on + strandat 152.300 kb on - strandat 152.300 kb on - strandat 152.300 kb on - strandat 152.303 kb on + strandat 152.303 kb on + strandat 152.304 kb on - strandat 152.304 kb on - strandat 152.304 kb on - strandat 152.304 kb on - strandat 152.444 kb on - strand, within EX28DRAFT_4169at 152.486 kb on + strand, within EX28DRAFT_4169at 152.487 kb on - strand, within EX28DRAFT_4169at 152.847 kb on + strandat 152.879 kb on - strandat 152.892 kb on - strandat 152.913 kb on + strandat 152.992 kb on + strandat 153.061 kb on + strand, within EX28DRAFT_4170at 153.061 kb on + strand, within EX28DRAFT_4170at 153.062 kb on - strand, within EX28DRAFT_4170at 153.293 kb on - strand, within EX28DRAFT_4170at 153.653 kb on - strand, within EX28DRAFT_4170at 153.654 kb on + strand, within EX28DRAFT_4170at 153.654 kb on + strand, within EX28DRAFT_4170at 153.655 kb on - strand, within EX28DRAFT_4170at 153.655 kb on - strand, within EX28DRAFT_4170at 153.661 kb on + strand, within EX28DRAFT_4170at 153.835 kb on - strand, within EX28DRAFT_4170at 153.835 kb on - strand, within EX28DRAFT_4170at 153.916 kb on + strand, within EX28DRAFT_4170at 154.150 kb on + strandat 154.154 kb on - strandat 154.355 kb on - strandat 154.482 kb on - strand, within EX28DRAFT_4171at 154.482 kb on - strand, within EX28DRAFT_4171at 154.522 kb on + strand, within EX28DRAFT_4171at 154.533 kb on - strand, within EX28DRAFT_4171at 154.569 kb on - strand, within EX28DRAFT_4171at 154.609 kb on + strand, within EX28DRAFT_4171at 154.826 kb on + strand, within EX28DRAFT_4171at 154.826 kb on + strand, within EX28DRAFT_4171at 154.828 kb on + strand, within EX28DRAFT_4171at 154.828 kb on + strand, within EX28DRAFT_4171at 154.829 kb on - strand, within EX28DRAFT_4171at 154.829 kb on - strand, within EX28DRAFT_4171at 154.829 kb on - strand, within EX28DRAFT_4171at 154.829 kb on - strand, within EX28DRAFT_4171at 154.829 kb on - strand, within EX28DRAFT_4171at 154.830 kb on + strand, within EX28DRAFT_4171at 154.830 kb on + strand, within EX28DRAFT_4171at 154.830 kb on + strand, within EX28DRAFT_4171at 154.844 kb on + strand, within EX28DRAFT_4171at 154.867 kb on + strand, within EX28DRAFT_4171at 154.889 kb on - strand, within EX28DRAFT_4171at 154.925 kb on + strand, within EX28DRAFT_4171at 154.925 kb on + strand, within EX28DRAFT_4171at 155.007 kb on - strand, within EX28DRAFT_4171at 155.058 kb on + strand, within EX28DRAFT_4171at 155.126 kb on + strand, within EX28DRAFT_4171

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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151,934 - EX28DRAFT_4168 0.90 +0.4
151,942 + EX28DRAFT_4168 0.90 +0.7
151,942 + EX28DRAFT_4168 0.90 -0.4
152,007 + -0.4
152,010 + +0.6
152,042 + -0.3
152,043 - +0.8
152,044 + +0.2
152,064 + -0.1
152,064 + -0.3
152,065 - -0.0
152,065 - +0.2
152,076 + -0.3
152,076 + -0.1
152,098 - +0.5
152,218 + -0.8
152,219 - +1.7
152,227 + -1.1
152,240 + -0.6
152,254 + +0.6
152,254 + -0.2
152,255 - -0.6
152,278 + +0.3
152,278 + -1.1
152,300 - -0.1
152,300 - -0.2
152,300 - -1.3
152,303 + +0.5
152,303 + +0.0
152,304 - -4.2
152,304 - +0.3
152,304 - +1.7
152,304 - +0.2
152,444 - EX28DRAFT_4169 0.29 +0.5
152,486 + EX28DRAFT_4169 0.36 +1.0
152,487 - EX28DRAFT_4169 0.36 +0.3
152,847 + -0.0
152,879 - -2.3
152,892 - -1.7
152,913 + -0.4
152,992 + -4.0
153,061 + EX28DRAFT_4170 0.11 -3.3
153,061 + EX28DRAFT_4170 0.11 -2.3
153,062 - EX28DRAFT_4170 0.11 -3.0
153,293 - EX28DRAFT_4170 0.30 -1.6
153,653 - EX28DRAFT_4170 0.59 -5.9
153,654 + EX28DRAFT_4170 0.59 -4.5
153,654 + EX28DRAFT_4170 0.59 -2.9
153,655 - EX28DRAFT_4170 0.59 -2.5
153,655 - EX28DRAFT_4170 0.59 -2.0
153,661 + EX28DRAFT_4170 0.60 -3.6
153,835 - EX28DRAFT_4170 0.74 -3.8
153,835 - EX28DRAFT_4170 0.74 -1.3
153,916 + EX28DRAFT_4170 0.81 -0.7
154,150 + +0.8
154,154 - -0.1
154,355 - -0.2
154,482 - EX28DRAFT_4171 0.16 +0.1
154,482 - EX28DRAFT_4171 0.16 +0.5
154,522 + EX28DRAFT_4171 0.18 +0.4
154,533 - EX28DRAFT_4171 0.18 -0.3
154,569 - EX28DRAFT_4171 0.20 +0.1
154,609 + EX28DRAFT_4171 0.22 -0.3
154,826 + EX28DRAFT_4171 0.32 -0.1
154,826 + EX28DRAFT_4171 0.32 +0.3
154,828 + EX28DRAFT_4171 0.33 -0.2
154,828 + EX28DRAFT_4171 0.33 -2.5
154,829 - EX28DRAFT_4171 0.33 -0.1
154,829 - EX28DRAFT_4171 0.33 -0.4
154,829 - EX28DRAFT_4171 0.33 +0.5
154,829 - EX28DRAFT_4171 0.33 +0.4
154,829 - EX28DRAFT_4171 0.33 -1.4
154,830 + EX28DRAFT_4171 0.33 +0.1
154,830 + EX28DRAFT_4171 0.33 +0.1
154,830 + EX28DRAFT_4171 0.33 -0.1
154,844 + EX28DRAFT_4171 0.33 -0.3
154,867 + EX28DRAFT_4171 0.34 +0.4
154,889 - EX28DRAFT_4171 0.35 +0.1
154,925 + EX28DRAFT_4171 0.37 +0.2
154,925 + EX28DRAFT_4171 0.37 -0.2
155,007 - EX28DRAFT_4171 0.41 +0.4
155,058 + EX28DRAFT_4171 0.44 +0.4
155,126 + EX28DRAFT_4171 0.47 -0.5

Or see this region's nucleotide sequence