Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4151 and EX28DRAFT_4152 are separated by 286 nucleotides EX28DRAFT_4152 and EX28DRAFT_4153 are separated by 57 nucleotides
EX28DRAFT_4151: EX28DRAFT_4151 - type IV pilus secretin (or competence protein) PilQ, at 131,884 to 133,044
_4151
EX28DRAFT_4152: EX28DRAFT_4152 - shikimate kinase (EC 2.7.1.71), at 133,331 to 133,852
_4152
EX28DRAFT_4153: EX28DRAFT_4153 - 3-dehydroquinate synthase (EC 4.2.3.4), at 133,910 to 134,998
_4153
Position (kb) 133
134 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 132.364 kb on - strand, within EX28DRAFT_4151 at 132.364 kb on - strand, within EX28DRAFT_4151 at 132.364 kb on - strand, within EX28DRAFT_4151 at 132.780 kb on + strand, within EX28DRAFT_4151 at 132.842 kb on + strand, within EX28DRAFT_4151 at 132.842 kb on + strand, within EX28DRAFT_4151 at 133.005 kb on - strand at 133.015 kb on - strand at 133.015 kb on - strand at 133.018 kb on - strand at 133.111 kb on + strand at 133.112 kb on - strand at 133.117 kb on - strand at 133.117 kb on - strand at 133.117 kb on - strand at 133.117 kb on - strand at 133.117 kb on - strand at 133.117 kb on - strand at 133.145 kb on - strand at 133.151 kb on + strand at 133.151 kb on + strand at 133.152 kb on - strand at 133.152 kb on - strand at 133.152 kb on - strand at 133.159 kb on + strand at 133.181 kb on - strand at 133.237 kb on + strand at 133.238 kb on - strand at 133.244 kb on + strand at 133.244 kb on + strand at 133.315 kb on + strand at 133.318 kb on + strand at 133.349 kb on - strand at 133.488 kb on + strand, within EX28DRAFT_4152 at 133.634 kb on + strand, within EX28DRAFT_4152 at 133.828 kb on + strand at 133.862 kb on + strand at 133.864 kb on + strand at 133.864 kb on + strand at 133.865 kb on - strand at 133.865 kb on - strand at 133.866 kb on + strand at 133.866 kb on + strand at 133.866 kb on + strand at 133.867 kb on - strand at 133.891 kb on + strand at 133.927 kb on + strand at 133.943 kb on - strand at 134.479 kb on + strand, within EX28DRAFT_4153 at 134.518 kb on + strand, within EX28DRAFT_4153 at 134.519 kb on - strand, within EX28DRAFT_4153 at 134.650 kb on + strand, within EX28DRAFT_4153 at 134.852 kb on + strand, within EX28DRAFT_4153
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 132,364 - EX28DRAFT_4151 0.41 -0.0 132,364 - EX28DRAFT_4151 0.41 -0.5 132,364 - EX28DRAFT_4151 0.41 +1.4 132,780 + EX28DRAFT_4151 0.77 -0.6 132,842 + EX28DRAFT_4151 0.83 -0.1 132,842 + EX28DRAFT_4151 0.83 +0.1 133,005 - +1.3 133,015 - -0.2 133,015 - +0.0 133,018 - -0.3 133,111 + +0.9 133,112 - +0.2 133,117 - -0.5 133,117 - -0.9 133,117 - -0.1 133,117 - +2.1 133,117 - -1.2 133,117 - -2.1 133,145 - +0.9 133,151 + -1.3 133,151 + -1.1 133,152 - -0.9 133,152 - -0.8 133,152 - -0.0 133,159 + -0.0 133,181 - -3.4 133,237 + -2.3 133,238 - +2.1 133,244 + -0.7 133,244 + -2.3 133,315 + -3.1 133,318 + -2.7 133,349 - -1.3 133,488 + EX28DRAFT_4152 0.30 -3.5 133,634 + EX28DRAFT_4152 0.58 -2.9 133,828 + -1.5 133,862 + -1.6 133,864 + +0.2 133,864 + -0.9 133,865 - -2.4 133,865 - -4.0 133,866 + -1.9 133,866 + -1.5 133,866 + -1.5 133,867 - +0.1 133,891 + -2.1 133,927 + -0.5 133,943 - -0.7 134,479 + EX28DRAFT_4153 0.52 +2.1 134,518 + EX28DRAFT_4153 0.56 -2.2 134,519 - EX28DRAFT_4153 0.56 -2.7 134,650 + EX28DRAFT_4153 0.68 -0.2 134,852 + EX28DRAFT_4153 0.87 -1.0
Or see this region's nucleotide sequence