Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4146

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4144 and EX28DRAFT_4145 are separated by 324 nucleotidesEX28DRAFT_4145 and EX28DRAFT_4146 are separated by 88 nucleotidesEX28DRAFT_4146 and EX28DRAFT_4147 are separated by 120 nucleotidesEX28DRAFT_4147 and EX28DRAFT_4148 overlap by 4 nucleotides EX28DRAFT_4144: EX28DRAFT_4144 - Intracellular growth attenuator protein IgaA, at 123,992 to 126,127 _4144 EX28DRAFT_4145: EX28DRAFT_4145 - NTP pyrophosphohydrolases including oxidative damage repair enzymes, at 126,452 to 127,012 _4145 EX28DRAFT_4146: EX28DRAFT_4146 - penicillin-binding protein, 1A family, at 127,101 to 129,653 _4146 EX28DRAFT_4147: EX28DRAFT_4147 - hypothetical protein, at 129,774 to 130,550 _4147 EX28DRAFT_4148: EX28DRAFT_4148 - Tfp pilus assembly protein PilN, at 130,547 to 131,041 _4148 Position (kb) 127 128 129 130Strain fitness (log2 ratio) -3 -2 -1 0 1at 126.142 kb on - strandat 126.142 kb on - strandat 126.142 kb on - strandat 126.142 kb on - strandat 126.142 kb on - strandat 126.142 kb on - strandat 126.162 kb on - strandat 126.169 kb on - strandat 126.178 kb on - strandat 126.215 kb on - strandat 126.215 kb on - strandat 126.215 kb on - strandat 126.217 kb on - strandat 126.355 kb on + strandat 126.356 kb on - strandat 126.365 kb on - strandat 126.365 kb on - strandat 126.365 kb on - strandat 126.438 kb on + strandat 126.439 kb on - strandat 126.518 kb on - strand, within EX28DRAFT_4145at 126.575 kb on - strand, within EX28DRAFT_4145at 126.575 kb on - strand, within EX28DRAFT_4145at 127.192 kb on + strandat 127.208 kb on + strandat 127.245 kb on - strandat 127.397 kb on + strand, within EX28DRAFT_4146at 127.398 kb on - strand, within EX28DRAFT_4146at 127.404 kb on + strand, within EX28DRAFT_4146at 127.404 kb on + strand, within EX28DRAFT_4146at 127.581 kb on + strand, within EX28DRAFT_4146at 127.581 kb on + strand, within EX28DRAFT_4146at 127.581 kb on + strand, within EX28DRAFT_4146at 127.582 kb on - strand, within EX28DRAFT_4146at 127.645 kb on + strand, within EX28DRAFT_4146at 127.645 kb on + strand, within EX28DRAFT_4146at 127.646 kb on - strand, within EX28DRAFT_4146at 127.785 kb on - strand, within EX28DRAFT_4146at 127.886 kb on - strand, within EX28DRAFT_4146at 128.024 kb on - strand, within EX28DRAFT_4146at 128.109 kb on + strand, within EX28DRAFT_4146at 128.123 kb on - strand, within EX28DRAFT_4146at 128.618 kb on - strand, within EX28DRAFT_4146at 128.639 kb on + strand, within EX28DRAFT_4146at 128.725 kb on + strand, within EX28DRAFT_4146at 128.726 kb on - strand, within EX28DRAFT_4146at 128.726 kb on - strand, within EX28DRAFT_4146at 128.828 kb on - strand, within EX28DRAFT_4146at 128.900 kb on - strand, within EX28DRAFT_4146at 128.953 kb on + strand, within EX28DRAFT_4146at 128.953 kb on + strand, within EX28DRAFT_4146at 128.954 kb on - strand, within EX28DRAFT_4146at 128.954 kb on - strand, within EX28DRAFT_4146at 128.969 kb on + strand, within EX28DRAFT_4146at 128.970 kb on - strand, within EX28DRAFT_4146at 129.107 kb on - strand, within EX28DRAFT_4146at 129.167 kb on - strand, within EX28DRAFT_4146at 129.167 kb on - strand, within EX28DRAFT_4146at 129.236 kb on + strand, within EX28DRAFT_4146at 129.237 kb on - strand, within EX28DRAFT_4146at 129.296 kb on + strand, within EX28DRAFT_4146at 129.297 kb on - strand, within EX28DRAFT_4146at 129.382 kb on + strand, within EX28DRAFT_4146at 129.418 kb on - strandat 129.418 kb on - strandat 129.442 kb on - strandat 129.502 kb on + strandat 129.503 kb on - strandat 129.571 kb on + strandat 129.571 kb on + strandat 129.571 kb on + strandat 129.572 kb on - strandat 129.578 kb on - strandat 129.578 kb on - strandat 129.579 kb on + strandat 129.637 kb on + strandat 129.637 kb on + strandat 129.638 kb on - strandat 129.642 kb on + strandat 129.643 kb on - strandat 129.690 kb on + strandat 129.708 kb on + strandat 129.708 kb on + strandat 129.709 kb on - strandat 129.709 kb on - strandat 129.709 kb on - strandat 129.733 kb on + strandat 129.733 kb on + strandat 129.733 kb on + strandat 129.733 kb on + strandat 129.733 kb on + strandat 129.734 kb on - strandat 129.734 kb on - strandat 129.734 kb on - strandat 129.735 kb on + strandat 129.736 kb on - strandat 129.806 kb on + strandat 129.978 kb on + strand, within EX28DRAFT_4147at 130.157 kb on + strand, within EX28DRAFT_4147at 130.157 kb on + strand, within EX28DRAFT_4147at 130.158 kb on - strand, within EX28DRAFT_4147at 130.506 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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126,142 - +0.1
126,142 - +0.0
126,142 - +0.1
126,142 - +0.4
126,142 - +0.1
126,142 - +0.5
126,162 - +0.2
126,169 - -0.0
126,178 - +0.1
126,215 - -0.2
126,215 - -0.5
126,215 - -0.4
126,217 - +0.1
126,355 + +0.7
126,356 - +0.2
126,365 - +0.2
126,365 - +0.1
126,365 - -1.4
126,438 + +0.6
126,439 - +0.3
126,518 - EX28DRAFT_4145 0.12 +0.1
126,575 - EX28DRAFT_4145 0.22 +0.4
126,575 - EX28DRAFT_4145 0.22 +0.1
127,192 + -0.4
127,208 + -1.3
127,245 - -0.5
127,397 + EX28DRAFT_4146 0.12 +0.2
127,398 - EX28DRAFT_4146 0.12 +0.1
127,404 + EX28DRAFT_4146 0.12 +0.3
127,404 + EX28DRAFT_4146 0.12 -0.8
127,581 + EX28DRAFT_4146 0.19 -0.3
127,581 + EX28DRAFT_4146 0.19 -1.2
127,581 + EX28DRAFT_4146 0.19 -0.0
127,582 - EX28DRAFT_4146 0.19 -1.0
127,645 + EX28DRAFT_4146 0.21 -0.5
127,645 + EX28DRAFT_4146 0.21 -0.1
127,646 - EX28DRAFT_4146 0.21 -0.4
127,785 - EX28DRAFT_4146 0.27 +0.4
127,886 - EX28DRAFT_4146 0.31 +0.0
128,024 - EX28DRAFT_4146 0.36 -0.1
128,109 + EX28DRAFT_4146 0.39 -0.2
128,123 - EX28DRAFT_4146 0.40 -2.1
128,618 - EX28DRAFT_4146 0.59 -0.8
128,639 + EX28DRAFT_4146 0.60 -0.4
128,725 + EX28DRAFT_4146 0.64 +0.2
128,726 - EX28DRAFT_4146 0.64 -0.3
128,726 - EX28DRAFT_4146 0.64 -0.5
128,828 - EX28DRAFT_4146 0.68 -0.1
128,900 - EX28DRAFT_4146 0.70 -0.0
128,953 + EX28DRAFT_4146 0.73 -0.3
128,953 + EX28DRAFT_4146 0.73 -0.6
128,954 - EX28DRAFT_4146 0.73 +0.3
128,954 - EX28DRAFT_4146 0.73 +1.4
128,969 + EX28DRAFT_4146 0.73 +0.3
128,970 - EX28DRAFT_4146 0.73 -0.0
129,107 - EX28DRAFT_4146 0.79 +0.1
129,167 - EX28DRAFT_4146 0.81 -0.5
129,167 - EX28DRAFT_4146 0.81 -0.4
129,236 + EX28DRAFT_4146 0.84 -0.2
129,237 - EX28DRAFT_4146 0.84 +1.3
129,296 + EX28DRAFT_4146 0.86 -0.8
129,297 - EX28DRAFT_4146 0.86 -0.2
129,382 + EX28DRAFT_4146 0.89 -0.6
129,418 - -0.3
129,418 - -2.0
129,442 - -1.7
129,502 + -1.4
129,503 - -0.5
129,571 + -0.6
129,571 + +0.2
129,571 + -1.0
129,572 - -0.1
129,578 - +0.8
129,578 - -0.2
129,579 + -0.1
129,637 + -0.8
129,637 + -0.1
129,638 - +0.3
129,642 + -0.0
129,643 - -3.5
129,690 + +0.1
129,708 + -0.2
129,708 + +0.5
129,709 - +0.1
129,709 - +0.4
129,709 - +0.3
129,733 + +0.4
129,733 + -0.4
129,733 + +1.4
129,733 + -0.5
129,733 + -0.4
129,734 - +0.1
129,734 - +0.5
129,734 - -0.0
129,735 + -1.8
129,736 - +0.4
129,806 + -0.2
129,978 + EX28DRAFT_4147 0.26 -0.1
130,157 + EX28DRAFT_4147 0.49 -0.3
130,157 + EX28DRAFT_4147 0.49 +0.3
130,158 - EX28DRAFT_4147 0.49 -0.1
130,506 + -0.1

Or see this region's nucleotide sequence