Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4120 and EX28DRAFT_4121 are separated by 188 nucleotides EX28DRAFT_4121 and EX28DRAFT_4122 are separated by 47 nucleotides EX28DRAFT_4122 and EX28DRAFT_4123 are separated by 16 nucleotides
EX28DRAFT_4120: EX28DRAFT_4120 - Glycerol-3-phosphate dehydrogenase, at 95,624 to 97,132
_4120
EX28DRAFT_4121: EX28DRAFT_4121 - Rhodanese-related sulfurtransferase, at 97,321 to 97,653
_4121
EX28DRAFT_4122: EX28DRAFT_4122 - rhomboid family protease GlpG, at 97,701 to 98,531
_4122
EX28DRAFT_4123: EX28DRAFT_4123 - transcriptional regulator, DeoR family, at 98,548 to 99,306
_4123
Position (kb) 97
98 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 96.814 kb on + strand, within EX28DRAFT_4120 at 96.815 kb on - strand, within EX28DRAFT_4120 at 96.815 kb on - strand, within EX28DRAFT_4120 at 96.957 kb on + strand, within EX28DRAFT_4120 at 97.227 kb on + strand at 97.246 kb on + strand at 97.247 kb on - strand at 97.247 kb on - strand at 97.273 kb on + strand at 97.273 kb on + strand at 97.309 kb on - strand at 97.339 kb on - strand at 97.341 kb on + strand at 97.346 kb on + strand at 97.346 kb on + strand at 97.347 kb on - strand at 97.347 kb on - strand at 97.549 kb on + strand, within EX28DRAFT_4121 at 97.580 kb on - strand, within EX28DRAFT_4121 at 97.580 kb on - strand, within EX28DRAFT_4121 at 97.580 kb on - strand, within EX28DRAFT_4121 at 97.636 kb on + strand at 97.662 kb on + strand at 97.662 kb on + strand at 97.662 kb on + strand at 97.662 kb on + strand at 97.662 kb on + strand at 97.663 kb on - strand at 97.663 kb on - strand at 97.721 kb on + strand at 97.721 kb on + strand at 97.722 kb on - strand at 97.757 kb on + strand at 97.796 kb on + strand, within EX28DRAFT_4122 at 97.796 kb on + strand, within EX28DRAFT_4122 at 98.027 kb on + strand, within EX28DRAFT_4122 at 98.030 kb on + strand, within EX28DRAFT_4122 at 98.179 kb on - strand, within EX28DRAFT_4122 at 98.313 kb on + strand, within EX28DRAFT_4122 at 98.313 kb on + strand, within EX28DRAFT_4122 at 98.313 kb on + strand, within EX28DRAFT_4122 at 98.314 kb on - strand, within EX28DRAFT_4122 at 98.314 kb on - strand, within EX28DRAFT_4122 at 98.328 kb on + strand, within EX28DRAFT_4122 at 98.328 kb on + strand, within EX28DRAFT_4122 at 98.329 kb on - strand, within EX28DRAFT_4122 at 98.370 kb on + strand, within EX28DRAFT_4122 at 98.371 kb on - strand, within EX28DRAFT_4122 at 98.387 kb on - strand, within EX28DRAFT_4122 at 98.387 kb on - strand, within EX28DRAFT_4122 at 98.444 kb on + strand, within EX28DRAFT_4122 at 98.529 kb on + strand at 98.529 kb on + strand at 98.602 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 96,814 + EX28DRAFT_4120 0.79 -2.3 96,815 - EX28DRAFT_4120 0.79 -1.4 96,815 - EX28DRAFT_4120 0.79 -0.8 96,957 + EX28DRAFT_4120 0.88 +2.1 97,227 + +0.9 97,246 + +0.0 97,247 - +2.1 97,247 - -0.8 97,273 + -1.0 97,273 + -0.9 97,309 - -0.0 97,339 - -0.9 97,341 + -1.3 97,346 + -0.0 97,346 + -0.2 97,347 - -2.7 97,347 - -1.7 97,549 + EX28DRAFT_4121 0.68 -0.5 97,580 - EX28DRAFT_4121 0.78 -1.5 97,580 - EX28DRAFT_4121 0.78 -1.4 97,580 - EX28DRAFT_4121 0.78 -2.4 97,636 + -0.4 97,662 + +0.6 97,662 + +0.6 97,662 + -0.1 97,662 + +0.1 97,662 + +0.3 97,663 - -3.8 97,663 - -3.8 97,721 + -2.7 97,721 + -0.4 97,722 - -3.0 97,757 + -0.2 97,796 + EX28DRAFT_4122 0.11 -0.7 97,796 + EX28DRAFT_4122 0.11 +0.2 98,027 + EX28DRAFT_4122 0.39 +0.6 98,030 + EX28DRAFT_4122 0.40 +0.1 98,179 - EX28DRAFT_4122 0.58 -0.9 98,313 + EX28DRAFT_4122 0.74 -0.0 98,313 + EX28DRAFT_4122 0.74 +1.2 98,313 + EX28DRAFT_4122 0.74 -3.6 98,314 - EX28DRAFT_4122 0.74 -1.6 98,314 - EX28DRAFT_4122 0.74 -0.3 98,328 + EX28DRAFT_4122 0.75 -1.7 98,328 + EX28DRAFT_4122 0.75 +0.9 98,329 - EX28DRAFT_4122 0.76 -0.9 98,370 + EX28DRAFT_4122 0.81 +1.2 98,371 - EX28DRAFT_4122 0.81 -1.3 98,387 - EX28DRAFT_4122 0.83 +0.0 98,387 - EX28DRAFT_4122 0.83 -0.9 98,444 + EX28DRAFT_4122 0.89 +0.5 98,529 + +0.1 98,529 + -1.5 98,602 + +1.1
Or see this region's nucleotide sequence