Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4064 and EX28DRAFT_4065 are separated by 96 nucleotides EX28DRAFT_4065 and EX28DRAFT_4066 are separated by 283 nucleotides EX28DRAFT_4066 and EX28DRAFT_4067 are separated by 43 nucleotides EX28DRAFT_4067 and EX28DRAFT_4068 overlap by 23 nucleotides EX28DRAFT_4068 and EX28DRAFT_4069 are separated by 175 nucleotides
EX28DRAFT_4064: EX28DRAFT_4064 - Putative SAM-dependent methyltransferase, at 40,453 to 41,247
_4064
EX28DRAFT_4065: EX28DRAFT_4065 - Universal stress protein UspA and related nucleotide-binding proteins, at 41,344 to 41,781
_4065
EX28DRAFT_4066: EX28DRAFT_4066 - Universal stress protein B (UspB), at 42,065 to 42,400
_4066
EX28DRAFT_4067: EX28DRAFT_4067 - hypothetical protein, at 42,444 to 42,851
_4067
EX28DRAFT_4068: EX28DRAFT_4068 - Putative toxin 60, at 42,829 to 43,218
_4068
EX28DRAFT_4069: EX28DRAFT_4069 - Phosphate transporter family, at 43,394 to 44,893
_4069
Position (kb) 42
43 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 41.158 kb on + strand, within EX28DRAFT_4064 at 41.294 kb on + strand at 41.294 kb on + strand at 41.295 kb on - strand at 41.337 kb on - strand at 41.345 kb on + strand at 41.345 kb on + strand at 41.345 kb on + strand at 41.346 kb on - strand at 41.478 kb on - strand, within EX28DRAFT_4065 at 41.655 kb on - strand, within EX28DRAFT_4065 at 41.719 kb on - strand, within EX28DRAFT_4065 at 41.782 kb on - strand at 41.782 kb on - strand at 41.798 kb on + strand at 41.798 kb on + strand at 41.799 kb on - strand at 41.799 kb on - strand at 41.814 kb on - strand at 41.856 kb on + strand at 41.857 kb on - strand at 41.862 kb on + strand at 41.863 kb on - strand at 41.950 kb on - strand at 41.953 kb on - strand at 42.064 kb on + strand at 42.064 kb on + strand at 42.064 kb on + strand at 42.064 kb on + strand at 42.064 kb on + strand at 42.065 kb on - strand at 42.065 kb on - strand at 42.112 kb on - strand, within EX28DRAFT_4066 at 42.128 kb on + strand, within EX28DRAFT_4066 at 42.130 kb on + strand, within EX28DRAFT_4066 at 42.160 kb on - strand, within EX28DRAFT_4066 at 42.191 kb on + strand, within EX28DRAFT_4066 at 42.257 kb on + strand, within EX28DRAFT_4066 at 42.258 kb on - strand, within EX28DRAFT_4066 at 42.263 kb on + strand, within EX28DRAFT_4066 at 42.264 kb on - strand, within EX28DRAFT_4066 at 42.264 kb on - strand, within EX28DRAFT_4066 at 42.267 kb on - strand, within EX28DRAFT_4066 at 42.301 kb on + strand, within EX28DRAFT_4066 at 42.302 kb on - strand, within EX28DRAFT_4066 at 42.476 kb on + strand at 42.476 kb on + strand at 42.476 kb on + strand at 42.477 kb on - strand at 42.509 kb on - strand, within EX28DRAFT_4067 at 42.534 kb on - strand, within EX28DRAFT_4067 at 42.534 kb on - strand, within EX28DRAFT_4067 at 42.605 kb on + strand, within EX28DRAFT_4067 at 42.605 kb on + strand, within EX28DRAFT_4067 at 42.606 kb on - strand, within EX28DRAFT_4067 at 42.606 kb on - strand, within EX28DRAFT_4067 at 42.606 kb on - strand, within EX28DRAFT_4067 at 42.640 kb on + strand, within EX28DRAFT_4067 at 42.640 kb on + strand, within EX28DRAFT_4067 at 42.641 kb on - strand, within EX28DRAFT_4067 at 42.641 kb on - strand, within EX28DRAFT_4067 at 42.641 kb on - strand, within EX28DRAFT_4067 at 42.650 kb on - strand, within EX28DRAFT_4067 at 42.692 kb on + strand, within EX28DRAFT_4067 at 42.692 kb on + strand, within EX28DRAFT_4067 at 42.693 kb on - strand, within EX28DRAFT_4067 at 42.694 kb on + strand, within EX28DRAFT_4067 at 42.694 kb on + strand, within EX28DRAFT_4067 at 42.732 kb on + strand, within EX28DRAFT_4067 at 42.732 kb on + strand, within EX28DRAFT_4067 at 42.809 kb on + strand, within EX28DRAFT_4067 at 42.810 kb on - strand, within EX28DRAFT_4067 at 42.851 kb on + strand at 42.851 kb on + strand at 42.852 kb on - strand at 42.852 kb on - strand at 42.852 kb on - strand at 42.852 kb on - strand at 42.856 kb on + strand at 42.942 kb on + strand, within EX28DRAFT_4068 at 42.943 kb on - strand, within EX28DRAFT_4068 at 42.996 kb on + strand, within EX28DRAFT_4068 at 43.033 kb on - strand, within EX28DRAFT_4068 at 43.065 kb on + strand, within EX28DRAFT_4068 at 43.112 kb on + strand, within EX28DRAFT_4068 at 43.112 kb on + strand, within EX28DRAFT_4068 at 43.112 kb on + strand, within EX28DRAFT_4068 at 43.112 kb on + strand, within EX28DRAFT_4068 at 43.112 kb on + strand, within EX28DRAFT_4068 at 43.132 kb on - strand, within EX28DRAFT_4068 at 43.167 kb on + strand, within EX28DRAFT_4068 at 43.218 kb on + strand at 43.219 kb on - strand at 43.344 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 41,158 + EX28DRAFT_4064 0.89 -1.3 41,294 + +0.4 41,294 + +0.2 41,295 - +0.5 41,337 - +0.5 41,345 + -0.1 41,345 + -0.6 41,345 + +0.2 41,346 - +0.1 41,478 - EX28DRAFT_4065 0.31 -0.6 41,655 - EX28DRAFT_4065 0.71 +1.0 41,719 - EX28DRAFT_4065 0.86 +0.1 41,782 - +0.1 41,782 - +0.3 41,798 + +1.3 41,798 + +0.2 41,799 - +0.3 41,799 - -0.4 41,814 - +1.1 41,856 + +1.1 41,857 - -0.0 41,862 + +0.3 41,863 - -0.4 41,950 - -0.2 41,953 - -1.5 42,064 + -1.9 42,064 + -1.8 42,064 + -2.0 42,064 + -2.0 42,064 + -0.9 42,065 - -4.1 42,065 - -1.2 42,112 - EX28DRAFT_4066 0.14 -1.8 42,128 + EX28DRAFT_4066 0.19 -1.6 42,130 + EX28DRAFT_4066 0.19 -1.8 42,160 - EX28DRAFT_4066 0.28 -1.6 42,191 + EX28DRAFT_4066 0.38 -1.8 42,257 + EX28DRAFT_4066 0.57 +0.9 42,258 - EX28DRAFT_4066 0.57 +2.1 42,263 + EX28DRAFT_4066 0.59 -1.0 42,264 - EX28DRAFT_4066 0.59 -3.3 42,264 - EX28DRAFT_4066 0.59 +0.0 42,267 - EX28DRAFT_4066 0.60 -1.6 42,301 + EX28DRAFT_4066 0.70 -3.8 42,302 - EX28DRAFT_4066 0.71 -2.0 42,476 + -1.1 42,476 + +0.1 42,476 + +0.8 42,477 - -0.5 42,509 - EX28DRAFT_4067 0.16 -0.0 42,534 - EX28DRAFT_4067 0.22 +0.1 42,534 - EX28DRAFT_4067 0.22 -0.4 42,605 + EX28DRAFT_4067 0.39 +0.5 42,605 + EX28DRAFT_4067 0.39 -1.3 42,606 - EX28DRAFT_4067 0.40 -0.8 42,606 - EX28DRAFT_4067 0.40 +0.6 42,606 - EX28DRAFT_4067 0.40 -1.1 42,640 + EX28DRAFT_4067 0.48 +0.1 42,640 + EX28DRAFT_4067 0.48 -0.2 42,641 - EX28DRAFT_4067 0.48 +0.7 42,641 - EX28DRAFT_4067 0.48 +0.7 42,641 - EX28DRAFT_4067 0.48 -0.0 42,650 - EX28DRAFT_4067 0.50 +0.2 42,692 + EX28DRAFT_4067 0.61 +0.4 42,692 + EX28DRAFT_4067 0.61 -0.6 42,693 - EX28DRAFT_4067 0.61 -0.4 42,694 + EX28DRAFT_4067 0.61 -0.4 42,694 + EX28DRAFT_4067 0.61 +0.2 42,732 + EX28DRAFT_4067 0.71 +0.4 42,732 + EX28DRAFT_4067 0.71 +1.1 42,809 + EX28DRAFT_4067 0.89 -0.5 42,810 - EX28DRAFT_4067 0.90 -0.5 42,851 + -2.5 42,851 + +0.9 42,852 - +0.2 42,852 - +0.2 42,852 - +0.7 42,852 - -1.0 42,856 + -0.8 42,942 + EX28DRAFT_4068 0.29 +0.8 42,943 - EX28DRAFT_4068 0.29 +0.0 42,996 + EX28DRAFT_4068 0.43 +0.3 43,033 - EX28DRAFT_4068 0.52 -0.2 43,065 + EX28DRAFT_4068 0.61 +0.1 43,112 + EX28DRAFT_4068 0.73 +0.1 43,112 + EX28DRAFT_4068 0.73 +0.9 43,112 + EX28DRAFT_4068 0.73 -0.7 43,112 + EX28DRAFT_4068 0.73 +0.8 43,112 + EX28DRAFT_4068 0.73 -0.2 43,132 - EX28DRAFT_4068 0.78 +0.3 43,167 + EX28DRAFT_4068 0.87 -0.3 43,218 + -0.3 43,219 - +0.0 43,344 - -1.5
Or see this region's nucleotide sequence