Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4051 and EX28DRAFT_4052 are separated by 229 nucleotides EX28DRAFT_4052 and EX28DRAFT_4053 are separated by 65 nucleotides
EX28DRAFT_4051: EX28DRAFT_4051 - Sugar kinases, ribokinase family, at 22,989 to 23,918
_4051
EX28DRAFT_4052: EX28DRAFT_4052 - FOG: EAL domain, at 24,148 to 24,921
_4052
EX28DRAFT_4053: EX28DRAFT_4053 - Uncharacterized protein involved in outer membrane biogenesis, at 24,987 to 27,029
_4053
Position (kb) 24
25 Strain fitness (log2 ratio) -2
-1
0
1
2 at 23.368 kb on + strand, within EX28DRAFT_4051 at 23.369 kb on - strand, within EX28DRAFT_4051 at 23.525 kb on - strand, within EX28DRAFT_4051 at 23.530 kb on + strand, within EX28DRAFT_4051 at 23.531 kb on - strand, within EX28DRAFT_4051 at 23.531 kb on - strand, within EX28DRAFT_4051 at 23.617 kb on + strand, within EX28DRAFT_4051 at 23.618 kb on - strand, within EX28DRAFT_4051 at 23.654 kb on - strand, within EX28DRAFT_4051 at 23.657 kb on - strand, within EX28DRAFT_4051 at 23.657 kb on - strand, within EX28DRAFT_4051 at 23.770 kb on + strand, within EX28DRAFT_4051 at 23.771 kb on - strand, within EX28DRAFT_4051 at 23.810 kb on + strand, within EX28DRAFT_4051 at 23.811 kb on - strand, within EX28DRAFT_4051 at 23.811 kb on - strand, within EX28DRAFT_4051 at 23.812 kb on + strand, within EX28DRAFT_4051 at 23.826 kb on + strand at 23.918 kb on + strand at 23.918 kb on + strand at 23.919 kb on - strand at 23.919 kb on - strand at 23.919 kb on - strand at 23.919 kb on - strand at 24.046 kb on + strand at 24.074 kb on + strand at 24.075 kb on - strand at 24.198 kb on + strand at 24.198 kb on + strand at 24.247 kb on + strand, within EX28DRAFT_4052 at 24.248 kb on - strand, within EX28DRAFT_4052 at 24.253 kb on + strand, within EX28DRAFT_4052 at 24.254 kb on - strand, within EX28DRAFT_4052 at 24.265 kb on + strand, within EX28DRAFT_4052 at 24.355 kb on + strand, within EX28DRAFT_4052 at 24.411 kb on + strand, within EX28DRAFT_4052 at 24.411 kb on + strand, within EX28DRAFT_4052 at 24.412 kb on - strand, within EX28DRAFT_4052 at 24.412 kb on - strand, within EX28DRAFT_4052 at 24.682 kb on + strand, within EX28DRAFT_4052 at 24.687 kb on + strand, within EX28DRAFT_4052 at 24.687 kb on + strand, within EX28DRAFT_4052 at 24.687 kb on + strand, within EX28DRAFT_4052 at 24.687 kb on + strand, within EX28DRAFT_4052 at 24.688 kb on - strand, within EX28DRAFT_4052 at 24.712 kb on - strand, within EX28DRAFT_4052 at 24.712 kb on - strand, within EX28DRAFT_4052 at 24.712 kb on - strand, within EX28DRAFT_4052 at 24.758 kb on + strand, within EX28DRAFT_4052 at 24.759 kb on - strand, within EX28DRAFT_4052 at 24.759 kb on - strand, within EX28DRAFT_4052 at 24.862 kb on + strand at 24.862 kb on + strand at 24.863 kb on - strand at 24.865 kb on + strand at 24.866 kb on - strand at 24.906 kb on + strand at 24.907 kb on - strand at 24.908 kb on + strand at 24.949 kb on + strand at 24.949 kb on + strand at 24.955 kb on + strand at 25.061 kb on + strand at 25.061 kb on + strand at 25.062 kb on - strand at 25.154 kb on - strand at 25.482 kb on - strand, within EX28DRAFT_4053 at 25.621 kb on + strand, within EX28DRAFT_4053 at 25.621 kb on + strand, within EX28DRAFT_4053 at 25.621 kb on + strand, within EX28DRAFT_4053 at 25.622 kb on - strand, within EX28DRAFT_4053 at 25.629 kb on + strand, within EX28DRAFT_4053 at 25.629 kb on + strand, within EX28DRAFT_4053 at 25.629 kb on + strand, within EX28DRAFT_4053 at 25.629 kb on + strand, within EX28DRAFT_4053 at 25.630 kb on - strand, within EX28DRAFT_4053 at 25.630 kb on - strand, within EX28DRAFT_4053 at 25.630 kb on - strand, within EX28DRAFT_4053 at 25.860 kb on + strand, within EX28DRAFT_4053
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 23,368 + EX28DRAFT_4051 0.41 -0.9 23,369 - EX28DRAFT_4051 0.41 +0.1 23,525 - EX28DRAFT_4051 0.58 -0.0 23,530 + EX28DRAFT_4051 0.58 +0.3 23,531 - EX28DRAFT_4051 0.58 -0.4 23,531 - EX28DRAFT_4051 0.58 -2.4 23,617 + EX28DRAFT_4051 0.68 -0.1 23,618 - EX28DRAFT_4051 0.68 -0.9 23,654 - EX28DRAFT_4051 0.72 -1.1 23,657 - EX28DRAFT_4051 0.72 -0.3 23,657 - EX28DRAFT_4051 0.72 +1.7 23,770 + EX28DRAFT_4051 0.84 -0.6 23,771 - EX28DRAFT_4051 0.84 +1.5 23,810 + EX28DRAFT_4051 0.88 -0.8 23,811 - EX28DRAFT_4051 0.88 -0.0 23,811 - EX28DRAFT_4051 0.88 -0.1 23,812 + EX28DRAFT_4051 0.88 -0.3 23,826 + -0.5 23,918 + -0.2 23,918 + -0.2 23,919 - -0.5 23,919 - +0.1 23,919 - -0.1 23,919 - +0.2 24,046 + -0.2 24,074 + +0.0 24,075 - +0.7 24,198 + -1.3 24,198 + +0.2 24,247 + EX28DRAFT_4052 0.13 -0.3 24,248 - EX28DRAFT_4052 0.13 -0.4 24,253 + EX28DRAFT_4052 0.14 +0.1 24,254 - EX28DRAFT_4052 0.14 +0.5 24,265 + EX28DRAFT_4052 0.15 -0.2 24,355 + EX28DRAFT_4052 0.27 +0.6 24,411 + EX28DRAFT_4052 0.34 -0.1 24,411 + EX28DRAFT_4052 0.34 -1.1 24,412 - EX28DRAFT_4052 0.34 -0.1 24,412 - EX28DRAFT_4052 0.34 -1.5 24,682 + EX28DRAFT_4052 0.69 +0.1 24,687 + EX28DRAFT_4052 0.70 +1.0 24,687 + EX28DRAFT_4052 0.70 -1.4 24,687 + EX28DRAFT_4052 0.70 -1.7 24,687 + EX28DRAFT_4052 0.70 -0.1 24,688 - EX28DRAFT_4052 0.70 -0.1 24,712 - EX28DRAFT_4052 0.73 +0.3 24,712 - EX28DRAFT_4052 0.73 -2.3 24,712 - EX28DRAFT_4052 0.73 +2.1 24,758 + EX28DRAFT_4052 0.79 -0.2 24,759 - EX28DRAFT_4052 0.79 +0.2 24,759 - EX28DRAFT_4052 0.79 +0.5 24,862 + -0.4 24,862 + -0.5 24,863 - +1.0 24,865 + -0.1 24,866 - +0.2 24,906 + +0.2 24,907 - -0.1 24,908 + -0.2 24,949 + +0.9 24,949 + -0.8 24,955 + -0.1 25,061 + +0.1 25,061 + +0.4 25,062 - -0.9 25,154 - -0.1 25,482 - EX28DRAFT_4053 0.24 -2.1 25,621 + EX28DRAFT_4053 0.31 +0.4 25,621 + EX28DRAFT_4053 0.31 -0.1 25,621 + EX28DRAFT_4053 0.31 -0.1 25,622 - EX28DRAFT_4053 0.31 +0.1 25,629 + EX28DRAFT_4053 0.31 -0.3 25,629 + EX28DRAFT_4053 0.31 -0.5 25,629 + EX28DRAFT_4053 0.31 +1.0 25,629 + EX28DRAFT_4053 0.31 -0.4 25,630 - EX28DRAFT_4053 0.31 +1.0 25,630 - EX28DRAFT_4053 0.31 -0.6 25,630 - EX28DRAFT_4053 0.31 +0.2 25,860 + EX28DRAFT_4053 0.43 +0.4
Or see this region's nucleotide sequence