Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4042

Experiment: MS_media with m-arsenite 1 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_4041 and EX28DRAFT_4042 are separated by 175 nucleotidesEX28DRAFT_4042 and EX28DRAFT_4043 are separated by 11 nucleotidesEX28DRAFT_4043 and EX28DRAFT_4044 overlap by 4 nucleotides EX28DRAFT_4041: EX28DRAFT_4041 - cellulose biosynthesis protein BcsE, at 5,322 to 6,884 _4041 EX28DRAFT_4042: EX28DRAFT_4042 - Protein of unknown function (DUF2629), at 7,060 to 7,248 _4042 EX28DRAFT_4043: EX28DRAFT_4043 - cellulose synthase operon protein YhjQ, at 7,260 to 8,012 _4043 EX28DRAFT_4044: EX28DRAFT_4044 - cellulose synthase catalytic subunit (UDP-forming), at 8,009 to 10,624 _4044 Position (kb) 7 8Strain fitness (log2 ratio) -2 -1 0 1 2 3at 6.192 kb on + strand, within EX28DRAFT_4041at 6.203 kb on + strand, within EX28DRAFT_4041at 6.204 kb on - strand, within EX28DRAFT_4041at 6.284 kb on + strand, within EX28DRAFT_4041at 6.355 kb on + strand, within EX28DRAFT_4041at 6.355 kb on + strand, within EX28DRAFT_4041at 6.355 kb on + strand, within EX28DRAFT_4041at 6.414 kb on + strand, within EX28DRAFT_4041at 6.415 kb on - strand, within EX28DRAFT_4041at 6.437 kb on + strand, within EX28DRAFT_4041at 6.491 kb on + strand, within EX28DRAFT_4041at 6.517 kb on - strand, within EX28DRAFT_4041at 6.571 kb on - strand, within EX28DRAFT_4041at 6.626 kb on + strand, within EX28DRAFT_4041at 6.693 kb on - strand, within EX28DRAFT_4041at 6.791 kb on + strandat 6.791 kb on + strandat 6.803 kb on + strandat 6.804 kb on - strandat 6.866 kb on + strandat 6.908 kb on + strandat 6.909 kb on - strandat 6.909 kb on - strandat 6.915 kb on - strandat 6.938 kb on + strandat 6.945 kb on - strandat 6.951 kb on - strandat 6.979 kb on - strandat 6.979 kb on - strandat 6.985 kb on + strandat 6.986 kb on - strandat 6.986 kb on - strandat 6.986 kb on - strandat 7.065 kb on + strandat 7.166 kb on - strand, within EX28DRAFT_4042at 7.246 kb on + strandat 7.246 kb on + strandat 7.345 kb on + strand, within EX28DRAFT_4043at 7.346 kb on - strand, within EX28DRAFT_4043at 7.346 kb on - strand, within EX28DRAFT_4043at 7.394 kb on + strand, within EX28DRAFT_4043at 7.394 kb on + strand, within EX28DRAFT_4043at 7.395 kb on - strand, within EX28DRAFT_4043at 7.395 kb on - strand, within EX28DRAFT_4043at 7.395 kb on - strand, within EX28DRAFT_4043at 7.454 kb on + strand, within EX28DRAFT_4043at 7.483 kb on - strand, within EX28DRAFT_4043at 7.484 kb on + strand, within EX28DRAFT_4043at 7.484 kb on + strand, within EX28DRAFT_4043at 7.484 kb on + strand, within EX28DRAFT_4043at 7.611 kb on + strand, within EX28DRAFT_4043at 7.611 kb on + strand, within EX28DRAFT_4043at 7.612 kb on - strand, within EX28DRAFT_4043at 7.685 kb on + strand, within EX28DRAFT_4043at 7.687 kb on + strand, within EX28DRAFT_4043at 7.688 kb on - strand, within EX28DRAFT_4043at 7.688 kb on - strand, within EX28DRAFT_4043at 7.688 kb on - strand, within EX28DRAFT_4043at 7.688 kb on - strand, within EX28DRAFT_4043at 8.008 kb on + strandat 8.008 kb on + strandat 8.008 kb on + strandat 8.009 kb on - strandat 8.182 kb on - strandat 8.182 kb on - strandat 8.202 kb on + strandat 8.202 kb on + strandat 8.202 kb on + strandat 8.202 kb on + strandat 8.203 kb on - strandat 8.203 kb on - strandat 8.203 kb on - strandat 8.203 kb on - strandat 8.203 kb on - strandat 8.216 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
remove
6,192 + EX28DRAFT_4041 0.56 +0.5
6,203 + EX28DRAFT_4041 0.56 +0.4
6,204 - EX28DRAFT_4041 0.56 -0.0
6,284 + EX28DRAFT_4041 0.62 +0.2
6,355 + EX28DRAFT_4041 0.66 +0.4
6,355 + EX28DRAFT_4041 0.66 +0.7
6,355 + EX28DRAFT_4041 0.66 -0.4
6,414 + EX28DRAFT_4041 0.70 -0.1
6,415 - EX28DRAFT_4041 0.70 +0.8
6,437 + EX28DRAFT_4041 0.71 +0.1
6,491 + EX28DRAFT_4041 0.75 +0.2
6,517 - EX28DRAFT_4041 0.76 +1.1
6,571 - EX28DRAFT_4041 0.80 +1.4
6,626 + EX28DRAFT_4041 0.83 +0.5
6,693 - EX28DRAFT_4041 0.88 +0.2
6,791 + +0.5
6,791 + -0.5
6,803 + +0.2
6,804 - +0.7
6,866 + +0.1
6,908 + -0.0
6,909 - -0.5
6,909 - +1.8
6,915 - +0.4
6,938 + +1.2
6,945 - +0.0
6,951 - +0.4
6,979 - -0.5
6,979 - +0.7
6,985 + +0.8
6,986 - +0.4
6,986 - +0.4
6,986 - +1.2
7,065 + -0.5
7,166 - EX28DRAFT_4042 0.56 +0.5
7,246 + -0.2
7,246 + +0.3
7,345 + EX28DRAFT_4043 0.11 +1.0
7,346 - EX28DRAFT_4043 0.11 -0.7
7,346 - EX28DRAFT_4043 0.11 +0.3
7,394 + EX28DRAFT_4043 0.18 +0.2
7,394 + EX28DRAFT_4043 0.18 +1.5
7,395 - EX28DRAFT_4043 0.18 +1.0
7,395 - EX28DRAFT_4043 0.18 +1.8
7,395 - EX28DRAFT_4043 0.18 +1.3
7,454 + EX28DRAFT_4043 0.26 +0.3
7,483 - EX28DRAFT_4043 0.30 +3.1
7,484 + EX28DRAFT_4043 0.30 +0.6
7,484 + EX28DRAFT_4043 0.30 -1.1
7,484 + EX28DRAFT_4043 0.30 -0.4
7,611 + EX28DRAFT_4043 0.47 +1.2
7,611 + EX28DRAFT_4043 0.47 +0.7
7,612 - EX28DRAFT_4043 0.47 +0.8
7,685 + EX28DRAFT_4043 0.56 +1.1
7,687 + EX28DRAFT_4043 0.57 +0.3
7,688 - EX28DRAFT_4043 0.57 +0.2
7,688 - EX28DRAFT_4043 0.57 +0.3
7,688 - EX28DRAFT_4043 0.57 -1.8
7,688 - EX28DRAFT_4043 0.57 +0.1
8,008 + -2.2
8,008 + +0.7
8,008 + -0.2
8,009 - +0.4
8,182 - +0.4
8,182 - +0.4
8,202 + +0.5
8,202 + +0.2
8,202 + +0.4
8,202 + +0.6
8,203 - +1.0
8,203 - +0.6
8,203 - +0.9
8,203 - +0.1
8,203 - +0.5
8,216 - +0.9

Or see this region's nucleotide sequence