Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3928 and EX28DRAFT_3929 are separated by 26 nucleotides EX28DRAFT_3929 and EX28DRAFT_3930 are separated by 122 nucleotides EX28DRAFT_3930 and EX28DRAFT_3931 are separated by 148 nucleotides EX28DRAFT_3931 and EX28DRAFT_3932 are separated by 186 nucleotides
EX28DRAFT_3928: EX28DRAFT_3928 - Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain, at 136,799 to 137,752
_3928
EX28DRAFT_3929: EX28DRAFT_3929 - Predicted Zn-dependent hydrolases of the beta-lactamase fold, at 137,779 to 138,558
_3929
EX28DRAFT_3930: EX28DRAFT_3930 - lipoprotein, YaeC family, at 138,681 to 139,481
_3930
EX28DRAFT_3931: EX28DRAFT_3931 - Predicted acetyltransferase, at 139,630 to 140,049
_3931
EX28DRAFT_3932: EX28DRAFT_3932 - transcriptional regulator, TetR family, at 140,236 to 140,805
_3932
Position (kb)
138
139
140 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 137.697 kb on + strand at 137.785 kb on + strand at 137.787 kb on + strand at 137.788 kb on - strand at 137.847 kb on - strand at 137.847 kb on - strand at 137.962 kb on - strand, within EX28DRAFT_3929 at 138.081 kb on - strand, within EX28DRAFT_3929 at 138.440 kb on + strand, within EX28DRAFT_3929 at 138.496 kb on + strand at 138.497 kb on - strand at 138.497 kb on - strand at 138.519 kb on + strand at 138.520 kb on - strand at 138.558 kb on + strand at 138.818 kb on - strand, within EX28DRAFT_3930 at 138.883 kb on + strand, within EX28DRAFT_3930 at 138.883 kb on + strand, within EX28DRAFT_3930 at 138.883 kb on + strand, within EX28DRAFT_3930 at 138.883 kb on + strand, within EX28DRAFT_3930 at 138.884 kb on - strand, within EX28DRAFT_3930 at 138.884 kb on - strand, within EX28DRAFT_3930 at 138.884 kb on - strand, within EX28DRAFT_3930 at 138.884 kb on - strand, within EX28DRAFT_3930 at 138.884 kb on - strand, within EX28DRAFT_3930 at 138.884 kb on - strand, within EX28DRAFT_3930 at 138.884 kb on - strand, within EX28DRAFT_3930 at 138.884 kb on - strand, within EX28DRAFT_3930 at 138.887 kb on + strand, within EX28DRAFT_3930 at 138.887 kb on + strand, within EX28DRAFT_3930 at 138.888 kb on - strand, within EX28DRAFT_3930 at 138.888 kb on - strand, within EX28DRAFT_3930 at 138.990 kb on - strand, within EX28DRAFT_3930 at 139.195 kb on + strand, within EX28DRAFT_3930 at 139.195 kb on + strand, within EX28DRAFT_3930 at 139.196 kb on - strand, within EX28DRAFT_3930 at 139.196 kb on - strand, within EX28DRAFT_3930 at 139.196 kb on - strand, within EX28DRAFT_3930 at 139.328 kb on - strand, within EX28DRAFT_3930 at 139.328 kb on - strand, within EX28DRAFT_3930 at 139.397 kb on + strand, within EX28DRAFT_3930 at 139.455 kb on + strand at 139.508 kb on + strand at 139.516 kb on - strand at 139.516 kb on - strand at 139.518 kb on - strand at 139.570 kb on - strand at 139.574 kb on + strand at 139.577 kb on - strand at 139.632 kb on - strand at 139.647 kb on + strand at 139.648 kb on - strand at 139.649 kb on + strand at 139.649 kb on + strand at 139.649 kb on + strand at 139.650 kb on - strand at 139.650 kb on - strand at 139.650 kb on - strand at 139.670 kb on + strand at 139.671 kb on - strand at 139.977 kb on + strand, within EX28DRAFT_3931 at 139.978 kb on - strand, within EX28DRAFT_3931 at 139.980 kb on - strand, within EX28DRAFT_3931 at 139.980 kb on - strand, within EX28DRAFT_3931 at 139.999 kb on + strand, within EX28DRAFT_3931 at 140.024 kb on - strand at 140.028 kb on + strand at 140.028 kb on + strand at 140.029 kb on - strand at 140.029 kb on - strand at 140.050 kb on - strand at 140.050 kb on - strand at 140.050 kb on - strand at 140.061 kb on + strand at 140.152 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 137,697 + +0.1 137,785 + -0.7 137,787 + -0.3 137,788 - +0.2 137,847 - +0.6 137,847 - +0.0 137,962 - EX28DRAFT_3929 0.23 -1.6 138,081 - EX28DRAFT_3929 0.39 -0.1 138,440 + EX28DRAFT_3929 0.85 +0.9 138,496 + +1.2 138,497 - +0.3 138,497 - +0.8 138,519 + -0.1 138,520 - +0.6 138,558 + -2.0 138,818 - EX28DRAFT_3930 0.17 +1.3 138,883 + EX28DRAFT_3930 0.25 -0.5 138,883 + EX28DRAFT_3930 0.25 -0.6 138,883 + EX28DRAFT_3930 0.25 +0.2 138,883 + EX28DRAFT_3930 0.25 -0.7 138,884 - EX28DRAFT_3930 0.25 +0.1 138,884 - EX28DRAFT_3930 0.25 +0.2 138,884 - EX28DRAFT_3930 0.25 -0.8 138,884 - EX28DRAFT_3930 0.25 +0.1 138,884 - EX28DRAFT_3930 0.25 +0.6 138,884 - EX28DRAFT_3930 0.25 -0.1 138,884 - EX28DRAFT_3930 0.25 -0.3 138,884 - EX28DRAFT_3930 0.25 +0.2 138,887 + EX28DRAFT_3930 0.26 +0.3 138,887 + EX28DRAFT_3930 0.26 -1.6 138,888 - EX28DRAFT_3930 0.26 -0.7 138,888 - EX28DRAFT_3930 0.26 -2.8 138,990 - EX28DRAFT_3930 0.39 -0.6 139,195 + EX28DRAFT_3930 0.64 +0.6 139,195 + EX28DRAFT_3930 0.64 -0.3 139,196 - EX28DRAFT_3930 0.64 -0.8 139,196 - EX28DRAFT_3930 0.64 -0.1 139,196 - EX28DRAFT_3930 0.64 -2.2 139,328 - EX28DRAFT_3930 0.81 +0.4 139,328 - EX28DRAFT_3930 0.81 -0.1 139,397 + EX28DRAFT_3930 0.89 -0.9 139,455 + +0.2 139,508 + -1.6 139,516 - -0.5 139,516 - -0.1 139,518 - -0.5 139,570 - +0.9 139,574 + -2.0 139,577 - -0.0 139,632 - -0.7 139,647 + -0.8 139,648 - +1.5 139,649 + -0.1 139,649 + +0.5 139,649 + -0.3 139,650 - -0.6 139,650 - +0.6 139,650 - -0.3 139,670 + -0.4 139,671 - +0.0 139,977 + EX28DRAFT_3931 0.83 -0.5 139,978 - EX28DRAFT_3931 0.83 -1.0 139,980 - EX28DRAFT_3931 0.83 +0.1 139,980 - EX28DRAFT_3931 0.83 +0.1 139,999 + EX28DRAFT_3931 0.88 -0.2 140,024 - -0.5 140,028 + +0.6 140,028 + -0.8 140,029 - -0.4 140,029 - -0.2 140,050 - +0.1 140,050 - -0.3 140,050 - +0.3 140,061 + +0.9 140,152 + -0.3
Or see this region's nucleotide sequence