Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3898

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3896 and EX28DRAFT_3897 are separated by 251 nucleotidesEX28DRAFT_3897 and EX28DRAFT_3898 are separated by 54 nucleotidesEX28DRAFT_3898 and EX28DRAFT_3899 are separated by 19 nucleotides EX28DRAFT_3896: EX28DRAFT_3896 - NAD-dependent DNA ligase (contains BRCT domain type II), at 103,222 to 104,892 _3896 EX28DRAFT_3897: EX28DRAFT_3897 - guanylate kinase (EC 2.7.4.8), at 105,144 to 105,767 _3897 EX28DRAFT_3898: EX28DRAFT_3898 - DNA-directed RNA polymerase subunit omega (EC 2.7.7.6), at 105,822 to 106,097 _3898 EX28DRAFT_3899: EX28DRAFT_3899 - (p)ppGpp synthetase, RelA/SpoT family, at 106,117 to 108,231 _3899 Position (kb) 105 106 107Strain fitness (log2 ratio) -2 -1 0 1at 104.908 kb on + strandat 104.922 kb on - strandat 105.012 kb on - strandat 105.071 kb on - strandat 105.097 kb on + strandat 105.097 kb on + strandat 105.105 kb on + strandat 105.817 kb on + strandat 105.821 kb on + strandat 105.965 kb on + strand, within EX28DRAFT_3898

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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104,908 + +0.2
104,922 - +0.2
105,012 - -0.8
105,071 - -0.2
105,097 + -2.5
105,097 + +0.3
105,105 + +0.3
105,817 + -2.5
105,821 + -1.2
105,965 + EX28DRAFT_3898 0.52 -2.0

Or see this region's nucleotide sequence