Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3870 and EX28DRAFT_3871 are separated by 215 nucleotides EX28DRAFT_3871 and EX28DRAFT_3872 are separated by 2 nucleotides
EX28DRAFT_3870: EX28DRAFT_3870 - 2-amino-3-ketobutyrate coenzyme A ligase (EC 2.3.1.29), at 79,573 to 80,769
_3870
EX28DRAFT_3871: EX28DRAFT_3871 - ADP-L-glycero-D-manno-heptose-6-epimerase, at 80,985 to 81,917
_3871
EX28DRAFT_3872: EX28DRAFT_3872 - lipopolysaccharide heptosyltransferase II, at 81,920 to 82,966
_3872
Position (kb) 80
81
82 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 80.162 kb on + strand, within EX28DRAFT_3870 at 80.163 kb on - strand, within EX28DRAFT_3870 at 80.331 kb on + strand, within EX28DRAFT_3870 at 80.341 kb on + strand, within EX28DRAFT_3870 at 80.615 kb on + strand, within EX28DRAFT_3870 at 80.616 kb on - strand, within EX28DRAFT_3870 at 80.688 kb on + strand at 80.691 kb on + strand at 80.691 kb on + strand at 80.692 kb on - strand at 80.803 kb on + strand at 80.804 kb on - strand at 80.804 kb on - strand at 80.816 kb on + strand at 80.816 kb on + strand at 80.816 kb on + strand at 80.818 kb on + strand at 80.819 kb on - strand at 80.864 kb on + strand at 80.915 kb on + strand at 80.915 kb on + strand at 80.915 kb on + strand at 80.915 kb on + strand at 80.916 kb on - strand at 80.916 kb on - strand at 80.919 kb on - strand at 80.919 kb on - strand at 80.924 kb on + strand at 80.925 kb on - strand at 81.915 kb on + strand at 81.919 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 80,162 + EX28DRAFT_3870 0.49 -0.1 80,163 - EX28DRAFT_3870 0.49 -0.3 80,331 + EX28DRAFT_3870 0.63 -1.3 80,341 + EX28DRAFT_3870 0.64 +1.5 80,615 + EX28DRAFT_3870 0.87 +0.6 80,616 - EX28DRAFT_3870 0.87 +0.6 80,688 + +0.3 80,691 + -0.3 80,691 + -1.5 80,692 - +0.0 80,803 + -0.8 80,804 - -0.7 80,804 - -0.5 80,816 + +1.4 80,816 + -0.0 80,816 + +0.2 80,818 + +0.2 80,819 - +1.6 80,864 + -0.2 80,915 + -0.1 80,915 + -0.6 80,915 + +0.5 80,915 + +0.2 80,916 - -1.3 80,916 - -0.0 80,919 - +0.1 80,919 - -0.8 80,924 + +0.4 80,925 - -3.8 81,915 + -1.1 81,919 + -1.3
Or see this region's nucleotide sequence