Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3825

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3824 and EX28DRAFT_3825 are separated by 160 nucleotidesEX28DRAFT_3825 and EX28DRAFT_3826 are separated by 183 nucleotides EX28DRAFT_3824: EX28DRAFT_3824 - glycyl-tRNA synthetase alpha chain (EC 6.1.1.14), at 28,710 to 29,621 _3824 EX28DRAFT_3825: EX28DRAFT_3825 - YsaB-like lipoprotein, at 29,782 to 30,087 _3825 EX28DRAFT_3826: EX28DRAFT_3826 - Uncharacterized protein conserved in bacteria, at 30,271 to 31,266 _3826 Position (kb) 29 30 31Strain fitness (log2 ratio) -1 0 1at 29.689 kb on + strandat 29.690 kb on - strandat 29.690 kb on - strandat 29.695 kb on - strandat 29.695 kb on - strandat 29.729 kb on - strandat 29.729 kb on - strandat 29.790 kb on + strandat 29.801 kb on - strandat 29.853 kb on + strand, within EX28DRAFT_3825at 29.854 kb on - strand, within EX28DRAFT_3825at 29.871 kb on - strand, within EX28DRAFT_3825at 29.871 kb on - strand, within EX28DRAFT_3825at 30.116 kb on + strandat 30.126 kb on - strandat 30.139 kb on + strandat 30.139 kb on + strandat 30.140 kb on - strandat 30.180 kb on - strandat 30.180 kb on - strandat 30.311 kb on + strandat 30.438 kb on - strand, within EX28DRAFT_3826at 30.478 kb on - strand, within EX28DRAFT_3826at 30.547 kb on + strand, within EX28DRAFT_3826at 30.547 kb on + strand, within EX28DRAFT_3826at 30.547 kb on + strand, within EX28DRAFT_3826at 30.547 kb on + strand, within EX28DRAFT_3826at 30.547 kb on + strand, within EX28DRAFT_3826at 30.547 kb on + strand, within EX28DRAFT_3826at 30.548 kb on - strand, within EX28DRAFT_3826at 30.548 kb on - strand, within EX28DRAFT_3826at 30.548 kb on - strand, within EX28DRAFT_3826at 30.550 kb on - strand, within EX28DRAFT_3826at 30.550 kb on - strand, within EX28DRAFT_3826at 30.592 kb on + strand, within EX28DRAFT_3826at 30.592 kb on + strand, within EX28DRAFT_3826at 30.593 kb on - strand, within EX28DRAFT_3826at 30.593 kb on - strand, within EX28DRAFT_3826at 30.648 kb on + strand, within EX28DRAFT_3826at 30.649 kb on - strand, within EX28DRAFT_3826at 30.652 kb on + strand, within EX28DRAFT_3826at 30.653 kb on - strand, within EX28DRAFT_3826at 30.653 kb on - strand, within EX28DRAFT_3826at 30.653 kb on - strand, within EX28DRAFT_3826at 30.793 kb on + strand, within EX28DRAFT_3826at 30.793 kb on + strand, within EX28DRAFT_3826at 30.794 kb on - strand, within EX28DRAFT_3826at 30.794 kb on - strand, within EX28DRAFT_3826at 30.814 kb on + strand, within EX28DRAFT_3826at 30.815 kb on - strand, within EX28DRAFT_3826at 30.817 kb on + strand, within EX28DRAFT_3826at 30.979 kb on + strand, within EX28DRAFT_3826at 30.985 kb on + strand, within EX28DRAFT_3826at 31.005 kb on + strand, within EX28DRAFT_3826at 31.006 kb on - strand, within EX28DRAFT_3826at 31.077 kb on + strand, within EX28DRAFT_3826at 31.078 kb on - strand, within EX28DRAFT_3826

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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29,689 + -0.7
29,690 - -0.0
29,690 - -0.2
29,695 - +0.2
29,695 - -0.1
29,729 - +0.1
29,729 - +0.1
29,790 + +0.0
29,801 - +0.4
29,853 + EX28DRAFT_3825 0.23 +0.8
29,854 - EX28DRAFT_3825 0.24 +0.8
29,871 - EX28DRAFT_3825 0.29 +0.7
29,871 - EX28DRAFT_3825 0.29 +0.3
30,116 + -0.4
30,126 - +0.8
30,139 + -0.4
30,139 + +0.4
30,140 - -0.3
30,180 - -0.1
30,180 - -0.3
30,311 + -1.2
30,438 - EX28DRAFT_3826 0.17 +0.2
30,478 - EX28DRAFT_3826 0.21 -0.4
30,547 + EX28DRAFT_3826 0.28 -0.6
30,547 + EX28DRAFT_3826 0.28 -1.1
30,547 + EX28DRAFT_3826 0.28 +0.1
30,547 + EX28DRAFT_3826 0.28 +0.0
30,547 + EX28DRAFT_3826 0.28 +0.9
30,547 + EX28DRAFT_3826 0.28 +0.0
30,548 - EX28DRAFT_3826 0.28 +0.3
30,548 - EX28DRAFT_3826 0.28 -0.8
30,548 - EX28DRAFT_3826 0.28 -0.0
30,550 - EX28DRAFT_3826 0.28 -0.0
30,550 - EX28DRAFT_3826 0.28 +0.1
30,592 + EX28DRAFT_3826 0.32 -1.1
30,592 + EX28DRAFT_3826 0.32 +0.1
30,593 - EX28DRAFT_3826 0.32 -1.0
30,593 - EX28DRAFT_3826 0.32 -0.4
30,648 + EX28DRAFT_3826 0.38 +0.1
30,649 - EX28DRAFT_3826 0.38 -0.1
30,652 + EX28DRAFT_3826 0.38 +0.6
30,653 - EX28DRAFT_3826 0.38 +0.2
30,653 - EX28DRAFT_3826 0.38 -1.2
30,653 - EX28DRAFT_3826 0.38 -0.2
30,793 + EX28DRAFT_3826 0.52 -0.0
30,793 + EX28DRAFT_3826 0.52 -1.3
30,794 - EX28DRAFT_3826 0.53 -1.1
30,794 - EX28DRAFT_3826 0.53 -0.0
30,814 + EX28DRAFT_3826 0.55 +0.2
30,815 - EX28DRAFT_3826 0.55 -0.7
30,817 + EX28DRAFT_3826 0.55 -0.1
30,979 + EX28DRAFT_3826 0.71 +0.2
30,985 + EX28DRAFT_3826 0.72 +1.7
31,005 + EX28DRAFT_3826 0.74 +0.1
31,006 - EX28DRAFT_3826 0.74 +0.2
31,077 + EX28DRAFT_3826 0.81 -1.4
31,078 - EX28DRAFT_3826 0.81 +0.4

Or see this region's nucleotide sequence