Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3817 and EX28DRAFT_3818 are separated by 2 nucleotides EX28DRAFT_3818 and EX28DRAFT_3819 overlap by 370 nucleotides EX28DRAFT_3819 and EX28DRAFT_3820 are separated by 246 nucleotides EX28DRAFT_3820 and EX28DRAFT_3821 are separated by 331 nucleotides EX28DRAFT_3821 and EX28DRAFT_3822 are separated by 39 nucleotides
EX28DRAFT_3817: EX28DRAFT_3817 - Lactate dehydrogenase and related dehydrogenases, at 21,895 to 22,869
_3817
EX28DRAFT_3818: EX28DRAFT_3818 - RNA, at 22,872 to 23,297
_3818
EX28DRAFT_3819: EX28DRAFT_3819 - Cold shock proteins, at 22,928 to 23,140
_3819
EX28DRAFT_3820: EX28DRAFT_3820 - Protein of unknown function (DUF3053), at 23,387 to 24,097
_3820
EX28DRAFT_3821: EX28DRAFT_3821 - Predicted transcriptional regulator, at 24,429 to 24,716
_3821
EX28DRAFT_3822: EX28DRAFT_3822 - ATPase components of ABC transporters with duplicated ATPase domains, at 24,756 to 26,375
_3822
Position (kb) 23
24
25 Strain fitness (log2 ratio) -2
-1
0
1
2 at 22.398 kb on + strand, within EX28DRAFT_3817 at 22.838 kb on + strand at 22.839 kb on - strand at 22.868 kb on - strand at 22.929 kb on + strand at 22.930 kb on - strand at 22.938 kb on - strand at 22.946 kb on - strand at 23.046 kb on - strand at 23.140 kb on + strand at 23.141 kb on - strand at 23.141 kb on - strand at 23.152 kb on + strand at 23.162 kb on + strand at 23.162 kb on + strand at 23.165 kb on - strand at 23.205 kb on - strand at 23.205 kb on - strand at 23.236 kb on - strand at 23.239 kb on + strand at 23.240 kb on - strand at 23.264 kb on - strand at 23.276 kb on + strand at 23.277 kb on - strand at 23.303 kb on + strand at 23.307 kb on + strand at 23.307 kb on + strand at 23.338 kb on + strand at 23.389 kb on - strand at 23.470 kb on - strand, within EX28DRAFT_3820 at 23.641 kb on - strand, within EX28DRAFT_3820 at 23.785 kb on + strand, within EX28DRAFT_3820 at 23.785 kb on + strand, within EX28DRAFT_3820 at 23.785 kb on + strand, within EX28DRAFT_3820 at 23.785 kb on + strand, within EX28DRAFT_3820 at 23.786 kb on - strand, within EX28DRAFT_3820 at 23.786 kb on - strand, within EX28DRAFT_3820 at 23.787 kb on + strand, within EX28DRAFT_3820 at 23.787 kb on + strand, within EX28DRAFT_3820 at 23.787 kb on + strand, within EX28DRAFT_3820 at 23.787 kb on + strand, within EX28DRAFT_3820 at 23.788 kb on - strand, within EX28DRAFT_3820 at 23.825 kb on + strand, within EX28DRAFT_3820 at 23.969 kb on - strand, within EX28DRAFT_3820 at 24.100 kb on + strand at 24.101 kb on - strand at 24.185 kb on - strand at 24.185 kb on - strand at 24.259 kb on + strand at 24.259 kb on + strand at 24.260 kb on - strand at 24.260 kb on - strand at 24.266 kb on - strand at 24.278 kb on - strand at 24.282 kb on + strand at 24.283 kb on - strand at 24.286 kb on + strand at 24.286 kb on + strand at 24.286 kb on + strand at 24.287 kb on - strand at 24.307 kb on + strand at 24.359 kb on + strand at 24.360 kb on - strand at 24.369 kb on + strand at 24.369 kb on + strand at 24.414 kb on + strand at 24.435 kb on + strand at 24.435 kb on + strand at 24.438 kb on - strand at 24.438 kb on - strand at 24.494 kb on - strand, within EX28DRAFT_3821 at 24.540 kb on + strand, within EX28DRAFT_3821 at 24.541 kb on - strand, within EX28DRAFT_3821 at 24.541 kb on - strand, within EX28DRAFT_3821 at 24.541 kb on - strand, within EX28DRAFT_3821 at 24.662 kb on - strand, within EX28DRAFT_3821 at 24.662 kb on - strand, within EX28DRAFT_3821 at 24.709 kb on + strand at 24.710 kb on - strand at 24.814 kb on - strand at 24.870 kb on + strand at 24.870 kb on + strand at 24.870 kb on + strand at 24.871 kb on - strand at 24.937 kb on - strand, within EX28DRAFT_3822 at 24.987 kb on - strand, within EX28DRAFT_3822 at 25.091 kb on + strand, within EX28DRAFT_3822 at 25.092 kb on - strand, within EX28DRAFT_3822 at 25.092 kb on - strand, within EX28DRAFT_3822 at 25.092 kb on - strand, within EX28DRAFT_3822
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 22,398 + EX28DRAFT_3817 0.52 -0.4 22,838 + +0.6 22,839 - -1.0 22,868 - -0.0 22,929 + +0.2 22,930 - +0.9 22,938 - +0.4 22,946 - -0.9 23,046 - -0.2 23,140 + -0.2 23,141 - -0.5 23,141 - +0.2 23,152 + +0.7 23,162 + +0.1 23,162 + +0.4 23,165 - +0.3 23,205 - -0.2 23,205 - -0.6 23,236 - -0.3 23,239 + -1.6 23,240 - -0.0 23,264 - +0.3 23,276 + +2.5 23,277 - -0.8 23,303 + -0.2 23,307 + +0.1 23,307 + +0.9 23,338 + +0.0 23,389 - -0.1 23,470 - EX28DRAFT_3820 0.12 +0.2 23,641 - EX28DRAFT_3820 0.36 +0.5 23,785 + EX28DRAFT_3820 0.56 +0.4 23,785 + EX28DRAFT_3820 0.56 +0.7 23,785 + EX28DRAFT_3820 0.56 +0.3 23,785 + EX28DRAFT_3820 0.56 +0.1 23,786 - EX28DRAFT_3820 0.56 +0.4 23,786 - EX28DRAFT_3820 0.56 +0.2 23,787 + EX28DRAFT_3820 0.56 -1.7 23,787 + EX28DRAFT_3820 0.56 -0.0 23,787 + EX28DRAFT_3820 0.56 +0.2 23,787 + EX28DRAFT_3820 0.56 -0.0 23,788 - EX28DRAFT_3820 0.56 +0.6 23,825 + EX28DRAFT_3820 0.62 +0.5 23,969 - EX28DRAFT_3820 0.82 +0.3 24,100 + +0.3 24,101 - -0.5 24,185 - -1.0 24,185 - +0.2 24,259 + -0.0 24,259 + +0.1 24,260 - -0.2 24,260 - +0.5 24,266 - -1.1 24,278 - +0.3 24,282 + -0.1 24,283 - +0.6 24,286 + +0.5 24,286 + +0.5 24,286 + -2.3 24,287 - -0.2 24,307 + -0.7 24,359 + -0.2 24,360 - -1.3 24,369 + -0.4 24,369 + -0.8 24,414 + -0.5 24,435 + -0.6 24,435 + +0.2 24,438 - -0.6 24,438 - +0.0 24,494 - EX28DRAFT_3821 0.23 -0.0 24,540 + EX28DRAFT_3821 0.39 +2.0 24,541 - EX28DRAFT_3821 0.39 -0.2 24,541 - EX28DRAFT_3821 0.39 +0.1 24,541 - EX28DRAFT_3821 0.39 -0.5 24,662 - EX28DRAFT_3821 0.81 -0.8 24,662 - EX28DRAFT_3821 0.81 +0.0 24,709 + -0.6 24,710 - -1.6 24,814 - -0.4 24,870 + -0.5 24,870 + +0.6 24,870 + -0.3 24,871 - -0.0 24,937 - EX28DRAFT_3822 0.11 -0.6 24,987 - EX28DRAFT_3822 0.14 -0.4 25,091 + EX28DRAFT_3822 0.21 -0.7 25,092 - EX28DRAFT_3822 0.21 -1.4 25,092 - EX28DRAFT_3822 0.21 -0.4 25,092 - EX28DRAFT_3822 0.21 +0.2
Or see this region's nucleotide sequence