Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3724 and EX28DRAFT_3725 overlap by 4 nucleotides EX28DRAFT_3725 and EX28DRAFT_3726 are separated by 104 nucleotides EX28DRAFT_3726 and EX28DRAFT_3727 are separated by 62 nucleotides
EX28DRAFT_3724: EX28DRAFT_3724 - ABC-type multidrug transport system, ATPase component, at 400,361 to 401,287
_3724
EX28DRAFT_3725: EX28DRAFT_3725 - ABC-type polysaccharide/polyol phosphate export systems, permease component, at 401,284 to 402,054
_3725
EX28DRAFT_3726: EX28DRAFT_3726 - Phosphotransferase system, mannose/fructose-specific component IIA, at 402,159 to 402,599
_3726
EX28DRAFT_3727: EX28DRAFT_3727 - Predicted xylanase/chitin deacetylase, at 402,662 to 403,909
_3727
Position (kb) 401
402
403 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 400.293 kb on - strand at 400.295 kb on + strand at 400.296 kb on - strand at 400.297 kb on + strand at 400.297 kb on + strand at 400.350 kb on - strand at 400.354 kb on + strand at 400.354 kb on + strand at 400.390 kb on + strand at 400.431 kb on + strand at 400.432 kb on - strand at 400.460 kb on + strand, within EX28DRAFT_3724 at 400.690 kb on + strand, within EX28DRAFT_3724 at 400.723 kb on + strand, within EX28DRAFT_3724 at 401.103 kb on - strand, within EX28DRAFT_3724 at 401.108 kb on + strand, within EX28DRAFT_3724 at 401.164 kb on + strand, within EX28DRAFT_3724 at 401.208 kb on + strand at 401.208 kb on + strand at 401.212 kb on + strand at 401.219 kb on - strand at 401.259 kb on + strand at 401.260 kb on - strand at 401.344 kb on - strand at 401.349 kb on + strand at 401.350 kb on - strand at 401.395 kb on + strand, within EX28DRAFT_3725 at 401.396 kb on - strand, within EX28DRAFT_3725 at 401.451 kb on + strand, within EX28DRAFT_3725 at 401.451 kb on + strand, within EX28DRAFT_3725 at 401.452 kb on - strand, within EX28DRAFT_3725 at 401.452 kb on - strand, within EX28DRAFT_3725 at 401.452 kb on - strand, within EX28DRAFT_3725 at 401.455 kb on + strand, within EX28DRAFT_3725 at 401.455 kb on + strand, within EX28DRAFT_3725 at 401.455 kb on + strand, within EX28DRAFT_3725 at 401.455 kb on + strand, within EX28DRAFT_3725 at 401.456 kb on - strand, within EX28DRAFT_3725 at 401.456 kb on - strand, within EX28DRAFT_3725 at 401.456 kb on - strand, within EX28DRAFT_3725 at 401.457 kb on + strand, within EX28DRAFT_3725 at 401.458 kb on - strand, within EX28DRAFT_3725 at 401.519 kb on + strand, within EX28DRAFT_3725 at 401.519 kb on + strand, within EX28DRAFT_3725 at 401.520 kb on - strand, within EX28DRAFT_3725 at 401.849 kb on - strand, within EX28DRAFT_3725 at 401.908 kb on + strand, within EX28DRAFT_3725 at 401.908 kb on + strand, within EX28DRAFT_3725 at 401.909 kb on - strand, within EX28DRAFT_3725 at 401.992 kb on - strand at 402.005 kb on - strand at 402.102 kb on + strand at 402.147 kb on - strand at 402.158 kb on + strand at 402.158 kb on + strand at 402.159 kb on - strand at 402.159 kb on - strand at 402.159 kb on - strand at 402.159 kb on - strand at 402.212 kb on + strand, within EX28DRAFT_3726 at 402.402 kb on - strand, within EX28DRAFT_3726 at 402.402 kb on - strand, within EX28DRAFT_3726 at 402.435 kb on - strand, within EX28DRAFT_3726 at 402.435 kb on - strand, within EX28DRAFT_3726 at 402.435 kb on - strand, within EX28DRAFT_3726 at 402.460 kb on - strand, within EX28DRAFT_3726 at 402.589 kb on - strand at 402.597 kb on + strand at 402.626 kb on - strand at 402.764 kb on - strand at 402.866 kb on + strand, within EX28DRAFT_3727 at 402.866 kb on + strand, within EX28DRAFT_3727 at 402.997 kb on + strand, within EX28DRAFT_3727 at 402.998 kb on - strand, within EX28DRAFT_3727 at 403.020 kb on - strand, within EX28DRAFT_3727
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 400,293 - -1.7 400,295 + +1.3 400,296 - -3.4 400,297 + +1.6 400,297 + +1.4 400,350 - -2.6 400,354 + -0.7 400,354 + -5.0 400,390 + -1.5 400,431 + -0.9 400,432 - -3.9 400,460 + EX28DRAFT_3724 0.11 -1.8 400,690 + EX28DRAFT_3724 0.35 -2.7 400,723 + EX28DRAFT_3724 0.39 -2.1 401,103 - EX28DRAFT_3724 0.80 -1.4 401,108 + EX28DRAFT_3724 0.81 -2.8 401,164 + EX28DRAFT_3724 0.87 -2.4 401,208 + -2.8 401,208 + -1.4 401,212 + -1.5 401,219 - -0.5 401,259 + -2.7 401,260 - -0.5 401,344 - -2.2 401,349 + -1.8 401,350 - -4.3 401,395 + EX28DRAFT_3725 0.14 -4.6 401,396 - EX28DRAFT_3725 0.15 -1.9 401,451 + EX28DRAFT_3725 0.22 -1.5 401,451 + EX28DRAFT_3725 0.22 -1.3 401,452 - EX28DRAFT_3725 0.22 -1.5 401,452 - EX28DRAFT_3725 0.22 -2.2 401,452 - EX28DRAFT_3725 0.22 -2.7 401,455 + EX28DRAFT_3725 0.22 -2.6 401,455 + EX28DRAFT_3725 0.22 -1.0 401,455 + EX28DRAFT_3725 0.22 -3.2 401,455 + EX28DRAFT_3725 0.22 -2.5 401,456 - EX28DRAFT_3725 0.22 -2.8 401,456 - EX28DRAFT_3725 0.22 -1.9 401,456 - EX28DRAFT_3725 0.22 -2.8 401,457 + EX28DRAFT_3725 0.22 -1.8 401,458 - EX28DRAFT_3725 0.23 -2.4 401,519 + EX28DRAFT_3725 0.30 -1.8 401,519 + EX28DRAFT_3725 0.30 -2.3 401,520 - EX28DRAFT_3725 0.31 -1.6 401,849 - EX28DRAFT_3725 0.73 -2.0 401,908 + EX28DRAFT_3725 0.81 -3.0 401,908 + EX28DRAFT_3725 0.81 -0.5 401,909 - EX28DRAFT_3725 0.81 -1.9 401,992 - -3.6 402,005 - -2.3 402,102 + -0.3 402,147 - -0.5 402,158 + +0.2 402,158 + +0.3 402,159 - -0.5 402,159 - -0.6 402,159 - -1.3 402,159 - -0.1 402,212 + EX28DRAFT_3726 0.12 +0.4 402,402 - EX28DRAFT_3726 0.55 -0.9 402,402 - EX28DRAFT_3726 0.55 +0.5 402,435 - EX28DRAFT_3726 0.63 +0.3 402,435 - EX28DRAFT_3726 0.63 +0.8 402,435 - EX28DRAFT_3726 0.63 +0.5 402,460 - EX28DRAFT_3726 0.68 +1.3 402,589 - -0.5 402,597 + -0.0 402,626 - -1.1 402,764 - -0.5 402,866 + EX28DRAFT_3727 0.16 -1.0 402,866 + EX28DRAFT_3727 0.16 +0.3 402,997 + EX28DRAFT_3727 0.27 +0.0 402,998 - EX28DRAFT_3727 0.27 +0.1 403,020 - EX28DRAFT_3727 0.29 -0.2
Or see this region's nucleotide sequence