Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3652 and EX28DRAFT_3653 are separated by 74 nucleotides EX28DRAFT_3653 and EX28DRAFT_3654 are separated by 47 nucleotides
EX28DRAFT_3652: EX28DRAFT_3652 - DNA polymerase elongation subunit (family B), at 316,848 to 319,205
_3652
EX28DRAFT_3653: EX28DRAFT_3653 - L-ribulose-5-phosphate 4-epimerase, at 319,280 to 319,975
_3653
EX28DRAFT_3654: EX28DRAFT_3654 - L-arabinose isomerase, at 320,023 to 321,525
_3654
Position (kb) 319
320 Strain fitness (log2 ratio) -2
-1
0
1 at 318.288 kb on - strand, within EX28DRAFT_3652 at 318.420 kb on - strand, within EX28DRAFT_3652 at 318.556 kb on + strand, within EX28DRAFT_3652 at 318.575 kb on + strand, within EX28DRAFT_3652 at 318.610 kb on + strand, within EX28DRAFT_3652 at 318.662 kb on + strand, within EX28DRAFT_3652 at 318.663 kb on - strand, within EX28DRAFT_3652 at 318.663 kb on - strand, within EX28DRAFT_3652 at 318.664 kb on + strand, within EX28DRAFT_3652 at 318.664 kb on + strand, within EX28DRAFT_3652 at 318.664 kb on + strand, within EX28DRAFT_3652 at 318.664 kb on + strand, within EX28DRAFT_3652 at 318.664 kb on + strand, within EX28DRAFT_3652 at 318.665 kb on - strand, within EX28DRAFT_3652 at 318.665 kb on - strand, within EX28DRAFT_3652 at 318.665 kb on - strand, within EX28DRAFT_3652 at 318.665 kb on - strand, within EX28DRAFT_3652 at 318.665 kb on - strand, within EX28DRAFT_3652 at 318.665 kb on - strand, within EX28DRAFT_3652 at 318.665 kb on - strand, within EX28DRAFT_3652 at 318.703 kb on + strand, within EX28DRAFT_3652 at 318.764 kb on - strand, within EX28DRAFT_3652 at 318.956 kb on - strand, within EX28DRAFT_3652 at 318.956 kb on - strand, within EX28DRAFT_3652 at 319.179 kb on + strand at 319.211 kb on + strand at 319.255 kb on - strand at 319.260 kb on - strand at 319.269 kb on - strand at 319.270 kb on + strand at 319.270 kb on + strand at 319.271 kb on - strand at 319.272 kb on + strand at 319.272 kb on + strand at 319.273 kb on - strand at 319.275 kb on - strand at 319.294 kb on - strand at 319.320 kb on + strand at 319.392 kb on + strand, within EX28DRAFT_3653 at 319.393 kb on - strand, within EX28DRAFT_3653 at 319.393 kb on - strand, within EX28DRAFT_3653 at 319.393 kb on - strand, within EX28DRAFT_3653 at 319.393 kb on - strand, within EX28DRAFT_3653 at 319.444 kb on + strand, within EX28DRAFT_3653 at 319.608 kb on + strand, within EX28DRAFT_3653 at 319.609 kb on - strand, within EX28DRAFT_3653 at 319.769 kb on - strand, within EX28DRAFT_3653 at 319.919 kb on - strand at 319.970 kb on + strand at 319.971 kb on - strand at 319.971 kb on - strand at 320.020 kb on + strand at 320.021 kb on - strand at 320.024 kb on + strand at 320.025 kb on - strand at 320.417 kb on + strand, within EX28DRAFT_3654 at 320.417 kb on + strand, within EX28DRAFT_3654 at 320.418 kb on - strand, within EX28DRAFT_3654 at 320.418 kb on - strand, within EX28DRAFT_3654 at 320.516 kb on + strand, within EX28DRAFT_3654 at 320.517 kb on - strand, within EX28DRAFT_3654 at 320.517 kb on - strand, within EX28DRAFT_3654 at 320.522 kb on + strand, within EX28DRAFT_3654
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 318,288 - EX28DRAFT_3652 0.61 -0.1 318,420 - EX28DRAFT_3652 0.67 +1.1 318,556 + EX28DRAFT_3652 0.72 +0.2 318,575 + EX28DRAFT_3652 0.73 -0.4 318,610 + EX28DRAFT_3652 0.75 -1.5 318,662 + EX28DRAFT_3652 0.77 +0.8 318,663 - EX28DRAFT_3652 0.77 +0.2 318,663 - EX28DRAFT_3652 0.77 -0.4 318,664 + EX28DRAFT_3652 0.77 -0.1 318,664 + EX28DRAFT_3652 0.77 -0.3 318,664 + EX28DRAFT_3652 0.77 +0.3 318,664 + EX28DRAFT_3652 0.77 -0.0 318,664 + EX28DRAFT_3652 0.77 -0.0 318,665 - EX28DRAFT_3652 0.77 +0.1 318,665 - EX28DRAFT_3652 0.77 +0.3 318,665 - EX28DRAFT_3652 0.77 -0.4 318,665 - EX28DRAFT_3652 0.77 +0.1 318,665 - EX28DRAFT_3652 0.77 +0.5 318,665 - EX28DRAFT_3652 0.77 -0.3 318,665 - EX28DRAFT_3652 0.77 +0.1 318,703 + EX28DRAFT_3652 0.79 +0.3 318,764 - EX28DRAFT_3652 0.81 -0.0 318,956 - EX28DRAFT_3652 0.89 -1.0 318,956 - EX28DRAFT_3652 0.89 +0.0 319,179 + +0.2 319,211 + +0.3 319,255 - +0.0 319,260 - +0.3 319,269 - -0.0 319,270 + -0.4 319,270 + +0.2 319,271 - -0.5 319,272 + -0.3 319,272 + -0.1 319,273 - +0.2 319,275 - +0.3 319,294 - +0.6 319,320 + -0.1 319,392 + EX28DRAFT_3653 0.16 -0.6 319,393 - EX28DRAFT_3653 0.16 -1.0 319,393 - EX28DRAFT_3653 0.16 +0.8 319,393 - EX28DRAFT_3653 0.16 +0.1 319,393 - EX28DRAFT_3653 0.16 -2.1 319,444 + EX28DRAFT_3653 0.24 +0.3 319,608 + EX28DRAFT_3653 0.47 +0.1 319,609 - EX28DRAFT_3653 0.47 +0.7 319,769 - EX28DRAFT_3653 0.70 -1.1 319,919 - +0.8 319,970 + +0.3 319,971 - -0.2 319,971 - -1.2 320,020 + -0.3 320,021 - +0.0 320,024 + +0.9 320,025 - -0.3 320,417 + EX28DRAFT_3654 0.26 -0.5 320,417 + EX28DRAFT_3654 0.26 -0.9 320,418 - EX28DRAFT_3654 0.26 -0.4 320,418 - EX28DRAFT_3654 0.26 +0.4 320,516 + EX28DRAFT_3654 0.33 +0.1 320,517 - EX28DRAFT_3654 0.33 -0.1 320,517 - EX28DRAFT_3654 0.33 -0.2 320,522 + EX28DRAFT_3654 0.33 -0.5
Or see this region's nucleotide sequence