Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3620 and EX28DRAFT_3621 are separated by 110 nucleotides EX28DRAFT_3621 and EX28DRAFT_3622 are separated by 122 nucleotides
EX28DRAFT_3620: EX28DRAFT_3620 - transaldolase, at 280,176 to 281,129
_3620
EX28DRAFT_3621: EX28DRAFT_3621 - molybdenum cofactor synthesis domain, at 281,240 to 281,827
_3621
EX28DRAFT_3622: EX28DRAFT_3622 - Arabinose efflux permease, at 281,950 to 283,272
_3622
Position (kb) 281
282 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 280.255 kb on - strand at 280.387 kb on + strand, within EX28DRAFT_3620 at 280.452 kb on - strand, within EX28DRAFT_3620 at 280.559 kb on + strand, within EX28DRAFT_3620 at 280.580 kb on + strand, within EX28DRAFT_3620 at 280.581 kb on - strand, within EX28DRAFT_3620 at 280.690 kb on + strand, within EX28DRAFT_3620 at 280.691 kb on - strand, within EX28DRAFT_3620 at 280.691 kb on - strand, within EX28DRAFT_3620 at 280.691 kb on - strand, within EX28DRAFT_3620 at 280.692 kb on + strand, within EX28DRAFT_3620 at 280.731 kb on + strand, within EX28DRAFT_3620 at 280.731 kb on + strand, within EX28DRAFT_3620 at 280.732 kb on - strand, within EX28DRAFT_3620 at 280.793 kb on + strand, within EX28DRAFT_3620 at 280.803 kb on + strand, within EX28DRAFT_3620 at 280.812 kb on + strand, within EX28DRAFT_3620 at 280.812 kb on + strand, within EX28DRAFT_3620 at 280.813 kb on - strand, within EX28DRAFT_3620 at 280.959 kb on - strand, within EX28DRAFT_3620 at 280.969 kb on - strand, within EX28DRAFT_3620 at 281.050 kb on + strand at 281.128 kb on - strand at 281.165 kb on + strand at 281.200 kb on + strand at 281.240 kb on - strand at 281.245 kb on + strand at 281.245 kb on + strand at 281.245 kb on + strand at 281.250 kb on + strand at 281.250 kb on + strand at 281.262 kb on + strand at 281.262 kb on + strand at 281.556 kb on + strand, within EX28DRAFT_3621 at 281.556 kb on + strand, within EX28DRAFT_3621 at 281.556 kb on + strand, within EX28DRAFT_3621 at 281.563 kb on - strand, within EX28DRAFT_3621 at 281.724 kb on + strand, within EX28DRAFT_3621 at 281.735 kb on - strand, within EX28DRAFT_3621 at 281.756 kb on + strand, within EX28DRAFT_3621 at 281.756 kb on + strand, within EX28DRAFT_3621 at 281.757 kb on - strand, within EX28DRAFT_3621 at 281.818 kb on - strand at 281.838 kb on + strand at 281.838 kb on + strand at 281.838 kb on + strand at 281.839 kb on - strand at 281.849 kb on - strand at 281.881 kb on - strand at 281.950 kb on - strand at 281.958 kb on + strand at 281.958 kb on + strand at 281.959 kb on - strand at 281.959 kb on - strand at 281.986 kb on + strand at 282.069 kb on - strand at 282.205 kb on - strand, within EX28DRAFT_3622 at 282.274 kb on + strand, within EX28DRAFT_3622 at 282.274 kb on + strand, within EX28DRAFT_3622 at 282.274 kb on + strand, within EX28DRAFT_3622 at 282.274 kb on + strand, within EX28DRAFT_3622 at 282.274 kb on + strand, within EX28DRAFT_3622 at 282.274 kb on + strand, within EX28DRAFT_3622 at 282.275 kb on - strand, within EX28DRAFT_3622 at 282.275 kb on - strand, within EX28DRAFT_3622 at 282.275 kb on - strand, within EX28DRAFT_3622 at 282.477 kb on - strand, within EX28DRAFT_3622 at 282.565 kb on + strand, within EX28DRAFT_3622 at 282.659 kb on + strand, within EX28DRAFT_3622
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 280,255 - -1.4 280,387 + EX28DRAFT_3620 0.22 -0.4 280,452 - EX28DRAFT_3620 0.29 -1.0 280,559 + EX28DRAFT_3620 0.40 -0.8 280,580 + EX28DRAFT_3620 0.42 +0.0 280,581 - EX28DRAFT_3620 0.42 -0.9 280,690 + EX28DRAFT_3620 0.54 -0.9 280,691 - EX28DRAFT_3620 0.54 +0.2 280,691 - EX28DRAFT_3620 0.54 +0.2 280,691 - EX28DRAFT_3620 0.54 -0.7 280,692 + EX28DRAFT_3620 0.54 -0.9 280,731 + EX28DRAFT_3620 0.58 -1.2 280,731 + EX28DRAFT_3620 0.58 -0.2 280,732 - EX28DRAFT_3620 0.58 -0.7 280,793 + EX28DRAFT_3620 0.65 -0.5 280,803 + EX28DRAFT_3620 0.66 -0.6 280,812 + EX28DRAFT_3620 0.67 -1.0 280,812 + EX28DRAFT_3620 0.67 +2.1 280,813 - EX28DRAFT_3620 0.67 +0.3 280,959 - EX28DRAFT_3620 0.82 -0.5 280,969 - EX28DRAFT_3620 0.83 -2.1 281,050 + -0.2 281,128 - -0.7 281,165 + +1.1 281,200 + -3.0 281,240 - +1.0 281,245 + -0.1 281,245 + -0.0 281,245 + +0.9 281,250 + +0.4 281,250 + +0.7 281,262 + +0.3 281,262 + +1.3 281,556 + EX28DRAFT_3621 0.54 +2.1 281,556 + EX28DRAFT_3621 0.54 +0.9 281,556 + EX28DRAFT_3621 0.54 -0.3 281,563 - EX28DRAFT_3621 0.55 +1.0 281,724 + EX28DRAFT_3621 0.82 +0.7 281,735 - EX28DRAFT_3621 0.84 +0.6 281,756 + EX28DRAFT_3621 0.88 +0.5 281,756 + EX28DRAFT_3621 0.88 +1.8 281,757 - EX28DRAFT_3621 0.88 +1.4 281,818 - +0.8 281,838 + -1.4 281,838 + +1.2 281,838 + -0.1 281,839 - -0.6 281,849 - +1.1 281,881 - -0.4 281,950 - +0.6 281,958 + -1.6 281,958 + +0.1 281,959 - +0.8 281,959 - +0.7 281,986 + +0.3 282,069 - +1.0 282,205 - EX28DRAFT_3622 0.19 -0.4 282,274 + EX28DRAFT_3622 0.24 -0.4 282,274 + EX28DRAFT_3622 0.24 +0.2 282,274 + EX28DRAFT_3622 0.24 -0.0 282,274 + EX28DRAFT_3622 0.24 -0.6 282,274 + EX28DRAFT_3622 0.24 -0.4 282,274 + EX28DRAFT_3622 0.24 -0.1 282,275 - EX28DRAFT_3622 0.25 -0.1 282,275 - EX28DRAFT_3622 0.25 +0.8 282,275 - EX28DRAFT_3622 0.25 -0.9 282,477 - EX28DRAFT_3622 0.40 -0.1 282,565 + EX28DRAFT_3622 0.46 -0.3 282,659 + EX28DRAFT_3622 0.54 +0.6
Or see this region's nucleotide sequence