Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3606

Experiment: MS_media with m-arsenite 1 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_3604 and EX28DRAFT_3605 are separated by 50 nucleotidesEX28DRAFT_3605 and EX28DRAFT_3606 overlap by 4 nucleotidesEX28DRAFT_3606 and EX28DRAFT_3607 are separated by 211 nucleotidesEX28DRAFT_3607 and EX28DRAFT_3608 are separated by 14 nucleotides EX28DRAFT_3604: EX28DRAFT_3604 - inosine/xanthosine triphosphatase, at 263,623 to 264,138 _3604 EX28DRAFT_3605: EX28DRAFT_3605 - Fructose-2,6-bisphosphatase, at 264,189 to 264,836 _3605 EX28DRAFT_3606: EX28DRAFT_3606 - AraC-type DNA-binding domain-containing proteins, at 264,833 to 265,702 _3606 EX28DRAFT_3607: EX28DRAFT_3607 - Uncharacterized protein conserved in bacteria, at 265,914 to 266,384 _3607 EX28DRAFT_3608: EX28DRAFT_3608 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 266,399 to 267,088 _3608 Position (kb) 264 265 266Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 264.111 kb on + strandat 264.138 kb on + strandat 264.138 kb on + strandat 264.138 kb on + strandat 264.138 kb on + strandat 264.139 kb on - strandat 264.143 kb on - strandat 264.172 kb on + strandat 264.173 kb on - strandat 264.173 kb on - strandat 264.173 kb on - strandat 264.174 kb on + strandat 264.174 kb on + strandat 264.201 kb on + strandat 264.201 kb on + strandat 264.202 kb on - strandat 264.202 kb on - strandat 264.202 kb on - strandat 264.465 kb on - strand, within EX28DRAFT_3605at 264.465 kb on - strand, within EX28DRAFT_3605at 264.563 kb on + strand, within EX28DRAFT_3605at 265.072 kb on + strand, within EX28DRAFT_3606at 265.072 kb on + strand, within EX28DRAFT_3606at 265.073 kb on - strand, within EX28DRAFT_3606at 265.075 kb on - strand, within EX28DRAFT_3606at 265.111 kb on - strand, within EX28DRAFT_3606at 265.269 kb on + strand, within EX28DRAFT_3606at 265.269 kb on + strand, within EX28DRAFT_3606at 265.270 kb on - strand, within EX28DRAFT_3606at 265.270 kb on - strand, within EX28DRAFT_3606at 265.270 kb on - strand, within EX28DRAFT_3606at 265.270 kb on - strand, within EX28DRAFT_3606at 265.320 kb on + strand, within EX28DRAFT_3606at 265.527 kb on - strand, within EX28DRAFT_3606at 265.543 kb on + strand, within EX28DRAFT_3606at 265.544 kb on - strand, within EX28DRAFT_3606at 265.545 kb on + strand, within EX28DRAFT_3606at 265.546 kb on - strand, within EX28DRAFT_3606at 265.546 kb on - strand, within EX28DRAFT_3606at 265.546 kb on - strand, within EX28DRAFT_3606at 265.702 kb on + strandat 265.702 kb on + strandat 265.702 kb on + strandat 265.702 kb on + strandat 265.703 kb on - strandat 265.703 kb on - strandat 265.703 kb on - strandat 265.703 kb on - strandat 265.703 kb on - strandat 265.703 kb on - strandat 265.703 kb on - strandat 265.704 kb on + strandat 265.704 kb on + strandat 265.704 kb on + strandat 265.704 kb on + strandat 265.704 kb on + strandat 265.704 kb on + strandat 265.704 kb on + strandat 265.704 kb on + strandat 265.704 kb on + strandat 265.705 kb on - strandat 265.705 kb on - strandat 265.705 kb on - strandat 265.705 kb on - strandat 265.705 kb on - strandat 265.705 kb on - strandat 265.705 kb on - strandat 265.719 kb on + strandat 265.719 kb on + strandat 265.719 kb on + strandat 265.756 kb on + strandat 265.831 kb on - strandat 265.832 kb on + strandat 265.837 kb on + strandat 265.866 kb on + strandat 266.079 kb on + strand, within EX28DRAFT_3607at 266.196 kb on - strand, within EX28DRAFT_3607at 266.224 kb on + strand, within EX28DRAFT_3607at 266.277 kb on + strand, within EX28DRAFT_3607at 266.277 kb on + strand, within EX28DRAFT_3607at 266.277 kb on + strand, within EX28DRAFT_3607at 266.277 kb on + strand, within EX28DRAFT_3607at 266.277 kb on + strand, within EX28DRAFT_3607at 266.305 kb on - strand, within EX28DRAFT_3607at 266.330 kb on - strand, within EX28DRAFT_3607at 266.370 kb on - strandat 266.382 kb on + strandat 266.382 kb on + strandat 266.459 kb on + strandat 266.460 kb on - strandat 266.460 kb on - strandat 266.662 kb on - strand, within EX28DRAFT_3608at 266.699 kb on + strand, within EX28DRAFT_3608at 266.699 kb on + strand, within EX28DRAFT_3608at 266.700 kb on - strand, within EX28DRAFT_3608at 266.700 kb on - strand, within EX28DRAFT_3608

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
remove
264,111 + +0.4
264,138 + +1.2
264,138 + -0.4
264,138 + -0.1
264,138 + -0.0
264,139 - -0.8
264,143 - -0.0
264,172 + -1.4
264,173 - -0.0
264,173 - -0.7
264,173 - +1.2
264,174 + -0.3
264,174 + +0.4
264,201 + -1.0
264,201 + -0.6
264,202 - -0.5
264,202 - -0.5
264,202 - -0.6
264,465 - EX28DRAFT_3605 0.43 -0.9
264,465 - EX28DRAFT_3605 0.43 -0.8
264,563 + EX28DRAFT_3605 0.58 -1.8
265,072 + EX28DRAFT_3606 0.27 +0.4
265,072 + EX28DRAFT_3606 0.27 -1.2
265,073 - EX28DRAFT_3606 0.28 -0.2
265,075 - EX28DRAFT_3606 0.28 +0.1
265,111 - EX28DRAFT_3606 0.32 +1.9
265,269 + EX28DRAFT_3606 0.50 -0.5
265,269 + EX28DRAFT_3606 0.50 +0.9
265,270 - EX28DRAFT_3606 0.50 +0.4
265,270 - EX28DRAFT_3606 0.50 -0.9
265,270 - EX28DRAFT_3606 0.50 -0.6
265,270 - EX28DRAFT_3606 0.50 +1.0
265,320 + EX28DRAFT_3606 0.56 +0.1
265,527 - EX28DRAFT_3606 0.80 +0.4
265,543 + EX28DRAFT_3606 0.82 -3.0
265,544 - EX28DRAFT_3606 0.82 +0.5
265,545 + EX28DRAFT_3606 0.82 -0.5
265,546 - EX28DRAFT_3606 0.82 +0.2
265,546 - EX28DRAFT_3606 0.82 +0.7
265,546 - EX28DRAFT_3606 0.82 +0.2
265,702 + +2.7
265,702 + -0.9
265,702 + -1.2
265,702 + +0.4
265,703 - +0.4
265,703 - -1.9
265,703 - -0.4
265,703 - +1.1
265,703 - -1.0
265,703 - +2.7
265,703 - +0.2
265,704 + -0.6
265,704 + +0.2
265,704 + -1.4
265,704 + -0.7
265,704 + -1.4
265,704 + -0.1
265,704 + +0.2
265,704 + +0.3
265,704 + +0.8
265,705 - +0.9
265,705 - +0.4
265,705 - +0.2
265,705 - +0.2
265,705 - +0.2
265,705 - +0.3
265,705 - +0.0
265,719 + -0.4
265,719 + -0.5
265,719 + -1.7
265,756 + +0.9
265,831 - +1.1
265,832 + -3.2
265,837 + -0.3
265,866 + -0.2
266,079 + EX28DRAFT_3607 0.35 +3.7
266,196 - EX28DRAFT_3607 0.60 +0.1
266,224 + EX28DRAFT_3607 0.66 +0.3
266,277 + EX28DRAFT_3607 0.77 +0.3
266,277 + EX28DRAFT_3607 0.77 -0.1
266,277 + EX28DRAFT_3607 0.77 +0.4
266,277 + EX28DRAFT_3607 0.77 -0.5
266,277 + EX28DRAFT_3607 0.77 -0.2
266,305 - EX28DRAFT_3607 0.83 +0.6
266,330 - EX28DRAFT_3607 0.88 +0.1
266,370 - +0.0
266,382 + +0.1
266,382 + +0.0
266,459 + +0.1
266,460 - +0.6
266,460 - +0.1
266,662 - EX28DRAFT_3608 0.38 -0.9
266,699 + EX28DRAFT_3608 0.43 -0.6
266,699 + EX28DRAFT_3608 0.43 -0.6
266,700 - EX28DRAFT_3608 0.44 -0.3
266,700 - EX28DRAFT_3608 0.44 -0.4

Or see this region's nucleotide sequence