Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3597

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3596 and EX28DRAFT_3597 are separated by 74 nucleotidesEX28DRAFT_3597 and EX28DRAFT_3598 are separated by 37 nucleotides EX28DRAFT_3596: EX28DRAFT_3596 - phosphoserine phosphatase SerB, at 253,481 to 254,449 _3596 EX28DRAFT_3597: EX28DRAFT_3597 - DNA repair protein RadA, at 254,524 to 255,909 _3597 EX28DRAFT_3598: EX28DRAFT_3598 - nicotinamide-nucleotide adenylyltransferase, NadR type, at 255,947 to 257,179 _3598 Position (kb) 254 255 256Strain fitness (log2 ratio) -1 0 1at 254.448 kb on - strandat 254.557 kb on - strandat 254.848 kb on - strand, within EX28DRAFT_3597at 255.133 kb on + strand, within EX28DRAFT_3597at 255.726 kb on - strand, within EX28DRAFT_3597at 255.772 kb on - strandat 255.858 kb on - strandat 255.906 kb on - strandat 255.906 kb on - strandat 255.907 kb on + strandat 255.912 kb on - strandat 255.912 kb on - strandat 255.941 kb on + strandat 255.942 kb on - strandat 255.946 kb on + strandat 255.947 kb on - strandat 255.947 kb on - strandat 255.947 kb on - strandat 255.963 kb on - strandat 256.130 kb on - strand, within EX28DRAFT_3598at 256.186 kb on + strand, within EX28DRAFT_3598at 256.186 kb on + strand, within EX28DRAFT_3598at 256.186 kb on + strand, within EX28DRAFT_3598at 256.186 kb on + strand, within EX28DRAFT_3598at 256.187 kb on - strand, within EX28DRAFT_3598at 256.187 kb on - strand, within EX28DRAFT_3598at 256.187 kb on - strand, within EX28DRAFT_3598at 256.187 kb on - strand, within EX28DRAFT_3598at 256.187 kb on - strand, within EX28DRAFT_3598at 256.190 kb on + strand, within EX28DRAFT_3598at 256.190 kb on + strand, within EX28DRAFT_3598at 256.191 kb on - strand, within EX28DRAFT_3598at 256.191 kb on - strand, within EX28DRAFT_3598at 256.191 kb on - strand, within EX28DRAFT_3598at 256.339 kb on + strand, within EX28DRAFT_3598at 256.339 kb on + strand, within EX28DRAFT_3598at 256.340 kb on - strand, within EX28DRAFT_3598at 256.340 kb on - strand, within EX28DRAFT_3598at 256.343 kb on + strand, within EX28DRAFT_3598at 256.439 kb on - strand, within EX28DRAFT_3598at 256.462 kb on + strand, within EX28DRAFT_3598at 256.472 kb on + strand, within EX28DRAFT_3598at 256.472 kb on + strand, within EX28DRAFT_3598at 256.472 kb on + strand, within EX28DRAFT_3598at 256.472 kb on + strand, within EX28DRAFT_3598at 256.473 kb on - strand, within EX28DRAFT_3598at 256.473 kb on - strand, within EX28DRAFT_3598at 256.473 kb on - strand, within EX28DRAFT_3598at 256.556 kb on - strand, within EX28DRAFT_3598at 256.607 kb on + strand, within EX28DRAFT_3598at 256.607 kb on + strand, within EX28DRAFT_3598at 256.608 kb on - strand, within EX28DRAFT_3598at 256.608 kb on - strand, within EX28DRAFT_3598at 256.647 kb on + strand, within EX28DRAFT_3598at 256.651 kb on + strand, within EX28DRAFT_3598at 256.651 kb on + strand, within EX28DRAFT_3598at 256.651 kb on + strand, within EX28DRAFT_3598at 256.652 kb on - strand, within EX28DRAFT_3598at 256.652 kb on - strand, within EX28DRAFT_3598at 256.733 kb on + strand, within EX28DRAFT_3598at 256.745 kb on + strand, within EX28DRAFT_3598at 256.745 kb on + strand, within EX28DRAFT_3598at 256.746 kb on - strand, within EX28DRAFT_3598at 256.746 kb on - strand, within EX28DRAFT_3598at 256.796 kb on + strand, within EX28DRAFT_3598at 256.827 kb on - strand, within EX28DRAFT_3598at 256.827 kb on - strand, within EX28DRAFT_3598

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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254,448 - +0.1
254,557 - -0.7
254,848 - EX28DRAFT_3597 0.23 -1.0
255,133 + EX28DRAFT_3597 0.44 -1.1
255,726 - EX28DRAFT_3597 0.87 -1.0
255,772 - +1.5
255,858 - +0.7
255,906 - -0.1
255,906 - -0.1
255,907 + -0.5
255,912 - +0.1
255,912 - +0.5
255,941 + -0.5
255,942 - +0.3
255,946 + +1.0
255,947 - +0.4
255,947 - -0.3
255,947 - +0.1
255,963 - -0.7
256,130 - EX28DRAFT_3598 0.15 +0.0
256,186 + EX28DRAFT_3598 0.19 -0.4
256,186 + EX28DRAFT_3598 0.19 -0.2
256,186 + EX28DRAFT_3598 0.19 +0.3
256,186 + EX28DRAFT_3598 0.19 +0.3
256,187 - EX28DRAFT_3598 0.19 +0.5
256,187 - EX28DRAFT_3598 0.19 +0.9
256,187 - EX28DRAFT_3598 0.19 +0.5
256,187 - EX28DRAFT_3598 0.19 +0.0
256,187 - EX28DRAFT_3598 0.19 +0.3
256,190 + EX28DRAFT_3598 0.20 -0.8
256,190 + EX28DRAFT_3598 0.20 -0.5
256,191 - EX28DRAFT_3598 0.20 +1.0
256,191 - EX28DRAFT_3598 0.20 +0.7
256,191 - EX28DRAFT_3598 0.20 +0.6
256,339 + EX28DRAFT_3598 0.32 +0.6
256,339 + EX28DRAFT_3598 0.32 +0.4
256,340 - EX28DRAFT_3598 0.32 -0.1
256,340 - EX28DRAFT_3598 0.32 -0.2
256,343 + EX28DRAFT_3598 0.32 +1.0
256,439 - EX28DRAFT_3598 0.40 +0.4
256,462 + EX28DRAFT_3598 0.42 +0.6
256,472 + EX28DRAFT_3598 0.43 +0.5
256,472 + EX28DRAFT_3598 0.43 +1.4
256,472 + EX28DRAFT_3598 0.43 -0.3
256,472 + EX28DRAFT_3598 0.43 +0.5
256,473 - EX28DRAFT_3598 0.43 +0.1
256,473 - EX28DRAFT_3598 0.43 +0.4
256,473 - EX28DRAFT_3598 0.43 +0.5
256,556 - EX28DRAFT_3598 0.49 +0.6
256,607 + EX28DRAFT_3598 0.54 +0.8
256,607 + EX28DRAFT_3598 0.54 +1.1
256,608 - EX28DRAFT_3598 0.54 -0.9
256,608 - EX28DRAFT_3598 0.54 +0.3
256,647 + EX28DRAFT_3598 0.57 -1.6
256,651 + EX28DRAFT_3598 0.57 +0.5
256,651 + EX28DRAFT_3598 0.57 +0.6
256,651 + EX28DRAFT_3598 0.57 +0.5
256,652 - EX28DRAFT_3598 0.57 +0.5
256,652 - EX28DRAFT_3598 0.57 +0.2
256,733 + EX28DRAFT_3598 0.64 +0.5
256,745 + EX28DRAFT_3598 0.65 +0.4
256,745 + EX28DRAFT_3598 0.65 +0.3
256,746 - EX28DRAFT_3598 0.65 +0.2
256,746 - EX28DRAFT_3598 0.65 +0.3
256,796 + EX28DRAFT_3598 0.69 +0.7
256,827 - EX28DRAFT_3598 0.71 +0.3
256,827 - EX28DRAFT_3598 0.71 +0.2

Or see this region's nucleotide sequence