Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3516 and EX28DRAFT_3517 are separated by 152 nucleotides EX28DRAFT_3517 and EX28DRAFT_3518 overlap by 8 nucleotides EX28DRAFT_3518 and EX28DRAFT_3519 overlap by 26 nucleotides EX28DRAFT_3519 and EX28DRAFT_3520 are separated by 148 nucleotides EX28DRAFT_3520 and EX28DRAFT_3521 overlap by 1 nucleotides
EX28DRAFT_3516: EX28DRAFT_3516 - NAD-dependent aldehyde dehydrogenases, at 181,306 to 182,721
_3516
EX28DRAFT_3517: EX28DRAFT_3517 - Uncharacterized enzyme involved in biosynthesis of extracellular polysaccharides, at 182,874 to 183,197
_3517
EX28DRAFT_3518: EX28DRAFT_3518 - ACT domain-containing protein, at 183,190 to 183,585
_3518
EX28DRAFT_3519: EX28DRAFT_3519 - Predicted transcriptional regulators, at 183,560 to 184,255
_3519
EX28DRAFT_3520: EX28DRAFT_3520 - Transcriptional regulators, at 184,404 to 184,874
_3520
EX28DRAFT_3521: EX28DRAFT_3521 - Multidrug resistance efflux pump, at 184,874 to 185,938
_3521
Position (kb) 183
184
185 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 182.644 kb on - strand at 182.644 kb on - strand at 182.799 kb on + strand at 182.799 kb on + strand at 182.799 kb on + strand at 182.800 kb on - strand at 183.129 kb on + strand, within EX28DRAFT_3517 at 183.130 kb on - strand, within EX28DRAFT_3517 at 183.193 kb on + strand at 183.193 kb on + strand at 183.193 kb on + strand at 183.194 kb on - strand at 183.364 kb on - strand, within EX28DRAFT_3518 at 183.522 kb on + strand, within EX28DRAFT_3518 at 183.522 kb on + strand, within EX28DRAFT_3518 at 183.523 kb on - strand, within EX28DRAFT_3518 at 183.523 kb on - strand, within EX28DRAFT_3518 at 183.559 kb on + strand at 183.559 kb on + strand at 183.559 kb on + strand at 183.560 kb on - strand at 183.560 kb on - strand at 183.577 kb on - strand at 183.577 kb on - strand at 183.586 kb on + strand at 183.806 kb on + strand, within EX28DRAFT_3519 at 183.926 kb on + strand, within EX28DRAFT_3519 at 183.962 kb on + strand, within EX28DRAFT_3519 at 184.235 kb on - strand at 184.647 kb on + strand, within EX28DRAFT_3520 at 184.671 kb on + strand, within EX28DRAFT_3520 at 184.672 kb on - strand, within EX28DRAFT_3520 at 184.720 kb on + strand, within EX28DRAFT_3520 at 184.721 kb on - strand, within EX28DRAFT_3520 at 184.723 kb on + strand, within EX28DRAFT_3520 at 184.724 kb on - strand, within EX28DRAFT_3520 at 184.724 kb on - strand, within EX28DRAFT_3520 at 184.724 kb on - strand, within EX28DRAFT_3520 at 184.752 kb on + strand, within EX28DRAFT_3520 at 184.790 kb on + strand, within EX28DRAFT_3520 at 184.791 kb on - strand, within EX28DRAFT_3520 at 184.857 kb on - strand at 184.948 kb on + strand at 185.046 kb on + strand, within EX28DRAFT_3521 at 185.046 kb on + strand, within EX28DRAFT_3521 at 185.047 kb on - strand, within EX28DRAFT_3521
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 182,644 - +1.3 182,644 - +0.0 182,799 + -0.1 182,799 + +0.1 182,799 + +1.0 182,800 - +0.2 183,129 + EX28DRAFT_3517 0.79 +0.4 183,130 - EX28DRAFT_3517 0.79 -0.0 183,193 + +0.9 183,193 + -0.2 183,193 + +0.2 183,194 - -0.4 183,364 - EX28DRAFT_3518 0.44 +0.5 183,522 + EX28DRAFT_3518 0.84 +0.0 183,522 + EX28DRAFT_3518 0.84 -0.2 183,523 - EX28DRAFT_3518 0.84 +0.6 183,523 - EX28DRAFT_3518 0.84 -0.5 183,559 + +0.1 183,559 + +0.0 183,559 + +0.3 183,560 - -0.1 183,560 - -0.3 183,577 - +0.5 183,577 - +0.1 183,586 + +0.4 183,806 + EX28DRAFT_3519 0.35 -1.6 183,926 + EX28DRAFT_3519 0.53 +0.8 183,962 + EX28DRAFT_3519 0.58 -2.0 184,235 - +0.5 184,647 + EX28DRAFT_3520 0.52 +0.6 184,671 + EX28DRAFT_3520 0.57 +2.6 184,672 - EX28DRAFT_3520 0.57 -0.1 184,720 + EX28DRAFT_3520 0.67 +0.3 184,721 - EX28DRAFT_3520 0.67 +0.4 184,723 + EX28DRAFT_3520 0.68 -0.6 184,724 - EX28DRAFT_3520 0.68 +0.7 184,724 - EX28DRAFT_3520 0.68 +0.1 184,724 - EX28DRAFT_3520 0.68 -0.2 184,752 + EX28DRAFT_3520 0.74 -3.5 184,790 + EX28DRAFT_3520 0.82 -0.6 184,791 - EX28DRAFT_3520 0.82 +0.1 184,857 - +0.1 184,948 + -0.4 185,046 + EX28DRAFT_3521 0.16 -1.3 185,046 + EX28DRAFT_3521 0.16 -0.2 185,047 - EX28DRAFT_3521 0.16 -0.7
Or see this region's nucleotide sequence