Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3502 and EX28DRAFT_3503 are separated by 61 nucleotides EX28DRAFT_3503 and EX28DRAFT_3504 overlap by 4 nucleotides EX28DRAFT_3504 and EX28DRAFT_3505 are separated by 23 nucleotides EX28DRAFT_3505 and EX28DRAFT_3506 are separated by 9 nucleotides EX28DRAFT_3506 and EX28DRAFT_3507 are separated by 21 nucleotides EX28DRAFT_3507 and EX28DRAFT_3508 are separated by 185 nucleotides
EX28DRAFT_3502: EX28DRAFT_3502 - Amidases related to nicotinamidase, at 166,079 to 166,765
_3502
EX28DRAFT_3503: EX28DRAFT_3503 - XapX domain, at 166,827 to 167,048
_3503
EX28DRAFT_3504: EX28DRAFT_3504 - XapX domain, at 167,045 to 167,305
_3504
EX28DRAFT_3505: EX28DRAFT_3505 - Response regulator receiver domain, at 167,329 to 167,709
_3505
EX28DRAFT_3506: EX28DRAFT_3506 - PAS domain S-box, at 167,719 to 173,301
_3506
EX28DRAFT_3507: EX28DRAFT_3507 - Response regulator, at 173,323 to 173,922
_3507
EX28DRAFT_3508: EX28DRAFT_3508 - Lactoylglutathione lyase and related lyases, at 174,108 to 174,494
_3508
Position (kb) 167
168
169
170
171
172
173
174 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 166.878 kb on + strand, within EX28DRAFT_3503 at 166.878 kb on + strand, within EX28DRAFT_3503 at 166.878 kb on + strand, within EX28DRAFT_3503 at 166.878 kb on + strand, within EX28DRAFT_3503 at 166.879 kb on - strand, within EX28DRAFT_3503 at 166.879 kb on - strand, within EX28DRAFT_3503 at 167.059 kb on - strand at 167.091 kb on + strand, within EX28DRAFT_3504 at 167.097 kb on - strand, within EX28DRAFT_3504 at 167.200 kb on - strand, within EX28DRAFT_3504 at 167.219 kb on - strand, within EX28DRAFT_3504 at 167.425 kb on - strand, within EX28DRAFT_3505 at 167.444 kb on + strand, within EX28DRAFT_3505 at 167.528 kb on + strand, within EX28DRAFT_3505 at 167.529 kb on - strand, within EX28DRAFT_3505 at 167.578 kb on - strand, within EX28DRAFT_3505 at 167.619 kb on + strand, within EX28DRAFT_3505 at 167.679 kb on + strand at 167.680 kb on - strand at 167.798 kb on - strand at 168.026 kb on - strand at 168.177 kb on + strand at 168.178 kb on - strand at 168.289 kb on + strand, within EX28DRAFT_3506 at 168.289 kb on + strand, within EX28DRAFT_3506 at 168.289 kb on + strand, within EX28DRAFT_3506 at 168.290 kb on - strand, within EX28DRAFT_3506 at 168.290 kb on - strand, within EX28DRAFT_3506 at 168.290 kb on - strand, within EX28DRAFT_3506 at 168.291 kb on + strand, within EX28DRAFT_3506 at 168.291 kb on + strand, within EX28DRAFT_3506 at 168.292 kb on - strand, within EX28DRAFT_3506 at 168.292 kb on - strand, within EX28DRAFT_3506 at 168.292 kb on - strand, within EX28DRAFT_3506 at 168.350 kb on - strand, within EX28DRAFT_3506 at 168.885 kb on - strand, within EX28DRAFT_3506 at 168.887 kb on + strand, within EX28DRAFT_3506 at 168.888 kb on - strand, within EX28DRAFT_3506 at 169.095 kb on + strand, within EX28DRAFT_3506 at 169.096 kb on - strand, within EX28DRAFT_3506 at 169.192 kb on - strand, within EX28DRAFT_3506 at 169.202 kb on - strand, within EX28DRAFT_3506 at 169.202 kb on - strand, within EX28DRAFT_3506 at 169.202 kb on - strand, within EX28DRAFT_3506 at 169.385 kb on + strand, within EX28DRAFT_3506 at 169.516 kb on + strand, within EX28DRAFT_3506 at 169.516 kb on + strand, within EX28DRAFT_3506 at 169.517 kb on - strand, within EX28DRAFT_3506 at 169.517 kb on - strand, within EX28DRAFT_3506 at 169.534 kb on + strand, within EX28DRAFT_3506 at 169.564 kb on + strand, within EX28DRAFT_3506 at 169.718 kb on - strand, within EX28DRAFT_3506 at 169.840 kb on - strand, within EX28DRAFT_3506 at 170.042 kb on - strand, within EX28DRAFT_3506 at 170.091 kb on + strand, within EX28DRAFT_3506 at 170.230 kb on + strand, within EX28DRAFT_3506 at 170.230 kb on + strand, within EX28DRAFT_3506 at 170.231 kb on - strand, within EX28DRAFT_3506 at 170.231 kb on - strand, within EX28DRAFT_3506 at 170.444 kb on - strand, within EX28DRAFT_3506 at 170.728 kb on - strand, within EX28DRAFT_3506 at 170.817 kb on + strand, within EX28DRAFT_3506 at 170.889 kb on + strand, within EX28DRAFT_3506 at 170.939 kb on - strand, within EX28DRAFT_3506 at 171.091 kb on - strand, within EX28DRAFT_3506 at 171.191 kb on - strand, within EX28DRAFT_3506 at 171.268 kb on + strand, within EX28DRAFT_3506 at 171.318 kb on + strand, within EX28DRAFT_3506 at 171.386 kb on - strand, within EX28DRAFT_3506 at 171.696 kb on + strand, within EX28DRAFT_3506 at 171.710 kb on + strand, within EX28DRAFT_3506 at 172.040 kb on - strand, within EX28DRAFT_3506 at 172.144 kb on + strand, within EX28DRAFT_3506 at 172.298 kb on - strand, within EX28DRAFT_3506 at 172.474 kb on + strand, within EX28DRAFT_3506 at 172.552 kb on - strand, within EX28DRAFT_3506 at 172.858 kb on + strand at 172.859 kb on - strand at 172.872 kb on + strand at 172.951 kb on - strand at 172.951 kb on - strand at 173.153 kb on - strand at 173.325 kb on - strand at 173.539 kb on - strand, within EX28DRAFT_3507 at 173.906 kb on + strand at 173.906 kb on + strand at 173.906 kb on + strand at 173.906 kb on + strand at 173.906 kb on + strand at 173.991 kb on + strand at 174.033 kb on + strand at 174.033 kb on + strand at 174.039 kb on + strand at 174.039 kb on + strand at 174.064 kb on - strand at 174.064 kb on - strand at 174.071 kb on + strand at 174.071 kb on + strand at 174.071 kb on + strand at 174.109 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 166,878 + EX28DRAFT_3503 0.23 -0.4 166,878 + EX28DRAFT_3503 0.23 -0.1 166,878 + EX28DRAFT_3503 0.23 -0.5 166,878 + EX28DRAFT_3503 0.23 -0.2 166,879 - EX28DRAFT_3503 0.23 +0.3 166,879 - EX28DRAFT_3503 0.23 +0.5 167,059 - +0.8 167,091 + EX28DRAFT_3504 0.18 +0.4 167,097 - EX28DRAFT_3504 0.20 -0.4 167,200 - EX28DRAFT_3504 0.59 +0.1 167,219 - EX28DRAFT_3504 0.67 -0.2 167,425 - EX28DRAFT_3505 0.25 +0.4 167,444 + EX28DRAFT_3505 0.30 -0.4 167,528 + EX28DRAFT_3505 0.52 -0.7 167,529 - EX28DRAFT_3505 0.52 -0.6 167,578 - EX28DRAFT_3505 0.65 -0.4 167,619 + EX28DRAFT_3505 0.76 -0.4 167,679 + -0.6 167,680 - +0.8 167,798 - +0.1 168,026 - +0.4 168,177 + -0.8 168,178 - -0.1 168,289 + EX28DRAFT_3506 0.10 -0.8 168,289 + EX28DRAFT_3506 0.10 -0.2 168,289 + EX28DRAFT_3506 0.10 +0.0 168,290 - EX28DRAFT_3506 0.10 +0.3 168,290 - EX28DRAFT_3506 0.10 +0.2 168,290 - EX28DRAFT_3506 0.10 -3.1 168,291 + EX28DRAFT_3506 0.10 -0.2 168,291 + EX28DRAFT_3506 0.10 -0.7 168,292 - EX28DRAFT_3506 0.10 +0.6 168,292 - EX28DRAFT_3506 0.10 -0.4 168,292 - EX28DRAFT_3506 0.10 -0.5 168,350 - EX28DRAFT_3506 0.11 +0.4 168,885 - EX28DRAFT_3506 0.21 -0.4 168,887 + EX28DRAFT_3506 0.21 -0.2 168,888 - EX28DRAFT_3506 0.21 +2.1 169,095 + EX28DRAFT_3506 0.25 -0.2 169,096 - EX28DRAFT_3506 0.25 +0.9 169,192 - EX28DRAFT_3506 0.26 +1.7 169,202 - EX28DRAFT_3506 0.27 -0.7 169,202 - EX28DRAFT_3506 0.27 +0.2 169,202 - EX28DRAFT_3506 0.27 +0.2 169,385 + EX28DRAFT_3506 0.30 -0.4 169,516 + EX28DRAFT_3506 0.32 +0.1 169,516 + EX28DRAFT_3506 0.32 -0.5 169,517 - EX28DRAFT_3506 0.32 -1.5 169,517 - EX28DRAFT_3506 0.32 +0.2 169,534 + EX28DRAFT_3506 0.33 +0.5 169,564 + EX28DRAFT_3506 0.33 -1.5 169,718 - EX28DRAFT_3506 0.36 -0.3 169,840 - EX28DRAFT_3506 0.38 -1.8 170,042 - EX28DRAFT_3506 0.42 -0.1 170,091 + EX28DRAFT_3506 0.42 -0.1 170,230 + EX28DRAFT_3506 0.45 +0.4 170,230 + EX28DRAFT_3506 0.45 -0.2 170,231 - EX28DRAFT_3506 0.45 -0.3 170,231 - EX28DRAFT_3506 0.45 +0.1 170,444 - EX28DRAFT_3506 0.49 +0.0 170,728 - EX28DRAFT_3506 0.54 -0.1 170,817 + EX28DRAFT_3506 0.55 -0.6 170,889 + EX28DRAFT_3506 0.57 -0.4 170,939 - EX28DRAFT_3506 0.58 -0.1 171,091 - EX28DRAFT_3506 0.60 +0.1 171,191 - EX28DRAFT_3506 0.62 +0.6 171,268 + EX28DRAFT_3506 0.64 -0.1 171,318 + EX28DRAFT_3506 0.64 -0.9 171,386 - EX28DRAFT_3506 0.66 -2.8 171,696 + EX28DRAFT_3506 0.71 -0.5 171,710 + EX28DRAFT_3506 0.71 +0.0 172,040 - EX28DRAFT_3506 0.77 +1.0 172,144 + EX28DRAFT_3506 0.79 +0.4 172,298 - EX28DRAFT_3506 0.82 -0.3 172,474 + EX28DRAFT_3506 0.85 +1.3 172,552 - EX28DRAFT_3506 0.87 +0.3 172,858 + -0.7 172,859 - +0.1 172,872 + -0.0 172,951 - -0.2 172,951 - +0.0 173,153 - -0.2 173,325 - +0.7 173,539 - EX28DRAFT_3507 0.36 +0.0 173,906 + -0.7 173,906 + -0.3 173,906 + +0.6 173,906 + -0.1 173,906 + -0.4 173,991 + +0.3 174,033 + -0.5 174,033 + -0.0 174,039 + +0.3 174,039 + +0.6 174,064 - +0.7 174,064 - -0.4 174,071 + -0.6 174,071 + +0.2 174,071 + +0.1 174,109 + +0.3
Or see this region's nucleotide sequence