Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3429 and EX28DRAFT_3430 overlap by 17 nucleotides EX28DRAFT_3430 and EX28DRAFT_3431 overlap by 4 nucleotides EX28DRAFT_3431 and EX28DRAFT_3432 are separated by 83 nucleotides
EX28DRAFT_3429: EX28DRAFT_3429 - probable amidohydrolase EF_0837/AHA_3915, at 98,277 to 99,410
_3429
EX28DRAFT_3430: EX28DRAFT_3430 - uncharacterized pyridoxal phosphate-dependent enzyme, at 99,394 to 100,512
_3430
EX28DRAFT_3431: EX28DRAFT_3431 - conserved hypothetical protein EF_0839/AHA_3917, at 100,509 to 101,249
_3431
EX28DRAFT_3432: EX28DRAFT_3432 - 3-carboxymuconate cyclase, at 101,333 to 102,469
_3432
Position (kb) 99
100
101 Strain fitness (log2 ratio) -2
-1
0
1 at 98.565 kb on + strand, within EX28DRAFT_3429 at 98.596 kb on + strand, within EX28DRAFT_3429 at 98.597 kb on - strand, within EX28DRAFT_3429 at 98.663 kb on + strand, within EX28DRAFT_3429 at 98.712 kb on - strand, within EX28DRAFT_3429 at 99.077 kb on + strand, within EX28DRAFT_3429 at 99.077 kb on + strand, within EX28DRAFT_3429 at 99.081 kb on + strand, within EX28DRAFT_3429 at 99.127 kb on + strand, within EX28DRAFT_3429 at 99.128 kb on - strand, within EX28DRAFT_3429 at 99.128 kb on - strand, within EX28DRAFT_3429 at 99.218 kb on + strand, within EX28DRAFT_3429 at 99.366 kb on + strand at 99.423 kb on - strand at 99.559 kb on + strand, within EX28DRAFT_3430 at 99.559 kb on + strand, within EX28DRAFT_3430 at 99.559 kb on + strand, within EX28DRAFT_3430 at 99.560 kb on - strand, within EX28DRAFT_3430 at 100.015 kb on + strand, within EX28DRAFT_3430 at 100.015 kb on + strand, within EX28DRAFT_3430 at 100.016 kb on - strand, within EX28DRAFT_3430 at 100.075 kb on + strand, within EX28DRAFT_3430 at 100.171 kb on + strand, within EX28DRAFT_3430 at 100.172 kb on - strand, within EX28DRAFT_3430 at 100.378 kb on + strand, within EX28DRAFT_3430 at 100.387 kb on + strand, within EX28DRAFT_3430 at 100.388 kb on - strand, within EX28DRAFT_3430 at 100.388 kb on - strand, within EX28DRAFT_3430 at 100.399 kb on + strand, within EX28DRAFT_3430 at 100.490 kb on + strand at 100.677 kb on + strand, within EX28DRAFT_3431 at 100.678 kb on - strand, within EX28DRAFT_3431 at 100.743 kb on - strand, within EX28DRAFT_3431 at 100.989 kb on + strand, within EX28DRAFT_3431 at 100.990 kb on - strand, within EX28DRAFT_3431 at 100.990 kb on - strand, within EX28DRAFT_3431 at 101.101 kb on - strand, within EX28DRAFT_3431 at 101.157 kb on - strand, within EX28DRAFT_3431 at 101.160 kb on + strand, within EX28DRAFT_3431 at 101.160 kb on + strand, within EX28DRAFT_3431 at 101.160 kb on + strand, within EX28DRAFT_3431 at 101.161 kb on - strand, within EX28DRAFT_3431 at 101.161 kb on - strand, within EX28DRAFT_3431 at 101.161 kb on - strand, within EX28DRAFT_3431 at 101.214 kb on - strand at 101.214 kb on - strand at 101.247 kb on + strand at 101.247 kb on + strand at 101.247 kb on + strand at 101.248 kb on - strand at 101.248 kb on - strand at 101.250 kb on + strand at 101.420 kb on + strand at 101.420 kb on + strand at 101.421 kb on - strand at 101.421 kb on - strand at 101.421 kb on - strand at 101.486 kb on - strand, within EX28DRAFT_3432
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 98,565 + EX28DRAFT_3429 0.25 +0.2 98,596 + EX28DRAFT_3429 0.28 +0.1 98,597 - EX28DRAFT_3429 0.28 +0.0 98,663 + EX28DRAFT_3429 0.34 -0.8 98,712 - EX28DRAFT_3429 0.38 -0.2 99,077 + EX28DRAFT_3429 0.71 +0.5 99,077 + EX28DRAFT_3429 0.71 +0.0 99,081 + EX28DRAFT_3429 0.71 +0.4 99,127 + EX28DRAFT_3429 0.75 +0.0 99,128 - EX28DRAFT_3429 0.75 +0.4 99,128 - EX28DRAFT_3429 0.75 -0.8 99,218 + EX28DRAFT_3429 0.83 +0.7 99,366 + -1.2 99,423 - -0.4 99,559 + EX28DRAFT_3430 0.15 -0.0 99,559 + EX28DRAFT_3430 0.15 -0.6 99,559 + EX28DRAFT_3430 0.15 +0.1 99,560 - EX28DRAFT_3430 0.15 -0.9 100,015 + EX28DRAFT_3430 0.55 -0.3 100,015 + EX28DRAFT_3430 0.55 +0.5 100,016 - EX28DRAFT_3430 0.56 -1.8 100,075 + EX28DRAFT_3430 0.61 +0.2 100,171 + EX28DRAFT_3430 0.69 -0.2 100,172 - EX28DRAFT_3430 0.70 -0.4 100,378 + EX28DRAFT_3430 0.88 +0.1 100,387 + EX28DRAFT_3430 0.89 -0.5 100,388 - EX28DRAFT_3430 0.89 +0.1 100,388 - EX28DRAFT_3430 0.89 -0.1 100,399 + EX28DRAFT_3430 0.90 +0.1 100,490 + -0.0 100,677 + EX28DRAFT_3431 0.23 -0.7 100,678 - EX28DRAFT_3431 0.23 +0.6 100,743 - EX28DRAFT_3431 0.32 -2.4 100,989 + EX28DRAFT_3431 0.65 -0.0 100,990 - EX28DRAFT_3431 0.65 +0.3 100,990 - EX28DRAFT_3431 0.65 +0.5 101,101 - EX28DRAFT_3431 0.80 -0.1 101,157 - EX28DRAFT_3431 0.87 -0.5 101,160 + EX28DRAFT_3431 0.88 -0.6 101,160 + EX28DRAFT_3431 0.88 +0.5 101,160 + EX28DRAFT_3431 0.88 +0.3 101,161 - EX28DRAFT_3431 0.88 -0.1 101,161 - EX28DRAFT_3431 0.88 +0.1 101,161 - EX28DRAFT_3431 0.88 +0.6 101,214 - +0.0 101,214 - -0.3 101,247 + -0.3 101,247 + -0.3 101,247 + +0.2 101,248 - -0.4 101,248 - -0.1 101,250 + +0.6 101,420 + +0.5 101,420 + -0.1 101,421 - +0.1 101,421 - +0.9 101,421 - -0.0 101,486 - EX28DRAFT_3432 0.13 +0.9
Or see this region's nucleotide sequence