Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3406

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3405 and EX28DRAFT_3406 are separated by 224 nucleotidesEX28DRAFT_3406 and EX28DRAFT_3407 overlap by 4 nucleotides EX28DRAFT_3405: EX28DRAFT_3405 - methionine-S-sulfoxide reductase, at 74,443 to 75,084 _3405 EX28DRAFT_3406: EX28DRAFT_3406 - Outer membrane protein, at 75,309 to 77,042 _3406 EX28DRAFT_3407: EX28DRAFT_3407 - Uncharacterized protein conserved in bacteria, at 77,039 to 80,815 _3407 Position (kb) 75 76 77 78Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 74.378 kb on + strandat 74.378 kb on + strandat 74.378 kb on + strandat 74.379 kb on - strandat 74.380 kb on + strandat 74.380 kb on + strandat 74.380 kb on + strandat 74.380 kb on + strandat 74.381 kb on - strandat 74.381 kb on - strandat 74.381 kb on - strandat 74.438 kb on - strandat 74.442 kb on - strandat 74.516 kb on + strand, within EX28DRAFT_3405at 74.516 kb on + strand, within EX28DRAFT_3405at 74.540 kb on + strand, within EX28DRAFT_3405at 74.543 kb on + strand, within EX28DRAFT_3405at 74.544 kb on - strand, within EX28DRAFT_3405at 74.544 kb on - strand, within EX28DRAFT_3405at 74.544 kb on - strand, within EX28DRAFT_3405at 74.544 kb on - strand, within EX28DRAFT_3405at 74.666 kb on + strand, within EX28DRAFT_3405at 74.667 kb on - strand, within EX28DRAFT_3405at 74.762 kb on + strand, within EX28DRAFT_3405at 74.767 kb on - strand, within EX28DRAFT_3405at 75.137 kb on - strandat 75.150 kb on - strandat 75.174 kb on + strandat 75.188 kb on - strandat 75.198 kb on + strandat 75.294 kb on + strandat 75.529 kb on - strand, within EX28DRAFT_3406at 75.531 kb on + strand, within EX28DRAFT_3406at 75.532 kb on - strand, within EX28DRAFT_3406at 75.532 kb on - strand, within EX28DRAFT_3406at 75.590 kb on + strand, within EX28DRAFT_3406at 75.591 kb on - strand, within EX28DRAFT_3406at 75.774 kb on - strand, within EX28DRAFT_3406at 75.801 kb on - strand, within EX28DRAFT_3406at 75.856 kb on - strand, within EX28DRAFT_3406at 75.921 kb on + strand, within EX28DRAFT_3406at 75.922 kb on - strand, within EX28DRAFT_3406at 75.922 kb on - strand, within EX28DRAFT_3406at 75.958 kb on - strand, within EX28DRAFT_3406at 75.960 kb on + strand, within EX28DRAFT_3406at 75.960 kb on + strand, within EX28DRAFT_3406at 75.961 kb on - strand, within EX28DRAFT_3406at 75.961 kb on - strand, within EX28DRAFT_3406at 76.016 kb on + strand, within EX28DRAFT_3406at 76.287 kb on + strand, within EX28DRAFT_3406at 76.288 kb on - strand, within EX28DRAFT_3406at 76.288 kb on - strand, within EX28DRAFT_3406at 76.288 kb on - strand, within EX28DRAFT_3406at 76.290 kb on + strand, within EX28DRAFT_3406at 76.290 kb on + strand, within EX28DRAFT_3406at 76.290 kb on + strand, within EX28DRAFT_3406at 76.290 kb on + strand, within EX28DRAFT_3406at 76.291 kb on - strand, within EX28DRAFT_3406at 76.291 kb on - strand, within EX28DRAFT_3406at 76.291 kb on - strand, within EX28DRAFT_3406at 76.291 kb on - strand, within EX28DRAFT_3406at 76.291 kb on - strand, within EX28DRAFT_3406at 76.346 kb on + strand, within EX28DRAFT_3406at 76.430 kb on + strand, within EX28DRAFT_3406at 76.627 kb on - strand, within EX28DRAFT_3406at 76.744 kb on - strand, within EX28DRAFT_3406at 76.745 kb on + strand, within EX28DRAFT_3406at 76.745 kb on + strand, within EX28DRAFT_3406at 76.745 kb on + strand, within EX28DRAFT_3406at 76.746 kb on - strand, within EX28DRAFT_3406at 76.746 kb on - strand, within EX28DRAFT_3406at 76.746 kb on - strand, within EX28DRAFT_3406at 76.750 kb on - strand, within EX28DRAFT_3406at 76.750 kb on - strand, within EX28DRAFT_3406at 76.750 kb on - strand, within EX28DRAFT_3406at 76.830 kb on + strand, within EX28DRAFT_3406at 76.831 kb on - strand, within EX28DRAFT_3406at 76.831 kb on - strand, within EX28DRAFT_3406at 76.911 kb on - strandat 76.934 kb on - strandat 77.008 kb on + strandat 77.016 kb on + strandat 77.016 kb on + strandat 77.016 kb on + strandat 77.017 kb on - strandat 77.017 kb on - strandat 77.017 kb on - strandat 77.047 kb on - strandat 77.059 kb on - strandat 77.331 kb on + strandat 77.352 kb on + strandat 77.468 kb on - strand, within EX28DRAFT_3407at 77.795 kb on + strand, within EX28DRAFT_3407at 77.927 kb on - strand, within EX28DRAFT_3407at 77.933 kb on - strand, within EX28DRAFT_3407at 77.933 kb on - strand, within EX28DRAFT_3407at 77.980 kb on - strand, within EX28DRAFT_3407at 77.980 kb on - strand, within EX28DRAFT_3407

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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74,378 + -0.8
74,378 + -0.0
74,378 + +0.2
74,379 - +0.6
74,380 + +0.3
74,380 + -1.2
74,380 + -0.1
74,380 + +0.4
74,381 - -0.9
74,381 - +0.2
74,381 - -0.2
74,438 - +2.2
74,442 - -0.2
74,516 + EX28DRAFT_3405 0.11 +0.4
74,516 + EX28DRAFT_3405 0.11 -0.2
74,540 + EX28DRAFT_3405 0.15 +0.8
74,543 + EX28DRAFT_3405 0.16 -0.8
74,544 - EX28DRAFT_3405 0.16 -1.7
74,544 - EX28DRAFT_3405 0.16 +0.6
74,544 - EX28DRAFT_3405 0.16 -1.1
74,544 - EX28DRAFT_3405 0.16 -0.1
74,666 + EX28DRAFT_3405 0.35 -0.5
74,667 - EX28DRAFT_3405 0.35 -1.0
74,762 + EX28DRAFT_3405 0.50 -0.0
74,767 - EX28DRAFT_3405 0.50 +0.2
75,137 - +0.0
75,150 - +0.6
75,174 + +3.7
75,188 - -1.0
75,198 + +0.0
75,294 + +0.2
75,529 - EX28DRAFT_3406 0.13 -0.2
75,531 + EX28DRAFT_3406 0.13 -3.2
75,532 - EX28DRAFT_3406 0.13 -0.2
75,532 - EX28DRAFT_3406 0.13 -0.8
75,590 + EX28DRAFT_3406 0.16 +1.1
75,591 - EX28DRAFT_3406 0.16 -0.7
75,774 - EX28DRAFT_3406 0.27 +0.7
75,801 - EX28DRAFT_3406 0.28 -0.3
75,856 - EX28DRAFT_3406 0.32 -0.2
75,921 + EX28DRAFT_3406 0.35 -0.2
75,922 - EX28DRAFT_3406 0.35 -1.1
75,922 - EX28DRAFT_3406 0.35 -0.7
75,958 - EX28DRAFT_3406 0.37 +0.9
75,960 + EX28DRAFT_3406 0.38 -0.1
75,960 + EX28DRAFT_3406 0.38 -0.4
75,961 - EX28DRAFT_3406 0.38 +0.2
75,961 - EX28DRAFT_3406 0.38 +0.0
76,016 + EX28DRAFT_3406 0.41 -2.1
76,287 + EX28DRAFT_3406 0.56 +0.1
76,288 - EX28DRAFT_3406 0.56 -0.2
76,288 - EX28DRAFT_3406 0.56 -1.0
76,288 - EX28DRAFT_3406 0.56 -0.9
76,290 + EX28DRAFT_3406 0.57 -0.1
76,290 + EX28DRAFT_3406 0.57 -0.2
76,290 + EX28DRAFT_3406 0.57 +0.0
76,290 + EX28DRAFT_3406 0.57 -0.2
76,291 - EX28DRAFT_3406 0.57 -0.2
76,291 - EX28DRAFT_3406 0.57 -0.5
76,291 - EX28DRAFT_3406 0.57 +0.3
76,291 - EX28DRAFT_3406 0.57 -0.3
76,291 - EX28DRAFT_3406 0.57 +0.9
76,346 + EX28DRAFT_3406 0.60 -2.4
76,430 + EX28DRAFT_3406 0.65 +0.1
76,627 - EX28DRAFT_3406 0.76 -0.2
76,744 - EX28DRAFT_3406 0.83 -0.1
76,745 + EX28DRAFT_3406 0.83 -0.1
76,745 + EX28DRAFT_3406 0.83 -0.6
76,745 + EX28DRAFT_3406 0.83 -0.8
76,746 - EX28DRAFT_3406 0.83 -0.8
76,746 - EX28DRAFT_3406 0.83 -0.9
76,746 - EX28DRAFT_3406 0.83 +0.1
76,750 - EX28DRAFT_3406 0.83 -1.0
76,750 - EX28DRAFT_3406 0.83 +0.2
76,750 - EX28DRAFT_3406 0.83 -0.5
76,830 + EX28DRAFT_3406 0.88 -0.4
76,831 - EX28DRAFT_3406 0.88 -1.1
76,831 - EX28DRAFT_3406 0.88 +0.6
76,911 - -0.1
76,934 - +0.2
77,008 + -0.8
77,016 + -1.6
77,016 + +1.1
77,016 + +0.0
77,017 - +0.2
77,017 - +0.7
77,017 - -0.1
77,047 - -0.4
77,059 - -0.1
77,331 + -1.1
77,352 + -0.3
77,468 - EX28DRAFT_3407 0.11 -0.8
77,795 + EX28DRAFT_3407 0.20 -0.7
77,927 - EX28DRAFT_3407 0.24 -3.5
77,933 - EX28DRAFT_3407 0.24 -0.1
77,933 - EX28DRAFT_3407 0.24 -0.2
77,980 - EX28DRAFT_3407 0.25 -1.2
77,980 - EX28DRAFT_3407 0.25 -0.8

Or see this region's nucleotide sequence