Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3403

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3401 and EX28DRAFT_3402 overlap by 7 nucleotidesEX28DRAFT_3402 and EX28DRAFT_3403 are separated by 324 nucleotidesEX28DRAFT_3403 and EX28DRAFT_3404 are separated by 72 nucleotides EX28DRAFT_3401: EX28DRAFT_3401 - 3'(2'),5'-bisphosphate nucleotidase, bacterial, at 70,957 to 71,697 _3401 EX28DRAFT_3402: EX28DRAFT_3402 - conserved hypothetical protein YtfJ-family, TIGR01626, at 71,691 to 72,248 _3402 EX28DRAFT_3403: EX28DRAFT_3403 - Protein of unknown function (DUF1107), at 72,573 to 72,779 _3403 EX28DRAFT_3404: EX28DRAFT_3404 - Hemolysins and related proteins containing CBS domains, at 72,852 to 74,189 _3404 Position (kb) 72 73Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 71.644 kb on + strandat 71.646 kb on + strandat 71.646 kb on + strandat 71.692 kb on + strandat 71.693 kb on - strandat 72.050 kb on + strand, within EX28DRAFT_3402at 72.051 kb on - strand, within EX28DRAFT_3402at 72.051 kb on - strand, within EX28DRAFT_3402at 72.089 kb on + strand, within EX28DRAFT_3402at 72.103 kb on + strand, within EX28DRAFT_3402at 72.104 kb on - strand, within EX28DRAFT_3402at 72.104 kb on - strand, within EX28DRAFT_3402at 72.108 kb on - strand, within EX28DRAFT_3402at 72.114 kb on - strand, within EX28DRAFT_3402at 72.233 kb on + strandat 72.233 kb on + strandat 72.237 kb on - strandat 72.237 kb on - strandat 72.240 kb on + strandat 72.299 kb on + strandat 72.299 kb on + strandat 72.300 kb on - strandat 72.300 kb on - strandat 72.300 kb on - strandat 72.305 kb on + strandat 72.305 kb on + strandat 72.306 kb on - strandat 72.364 kb on + strandat 72.364 kb on + strandat 72.365 kb on - strandat 72.388 kb on + strandat 72.454 kb on - strandat 72.474 kb on + strandat 72.485 kb on + strandat 72.485 kb on + strandat 72.486 kb on - strandat 72.486 kb on - strandat 72.488 kb on - strandat 72.551 kb on - strandat 72.567 kb on - strandat 72.591 kb on + strandat 72.592 kb on - strandat 72.592 kb on - strandat 72.615 kb on + strand, within EX28DRAFT_3403at 72.616 kb on - strand, within EX28DRAFT_3403at 72.645 kb on + strand, within EX28DRAFT_3403at 72.645 kb on + strand, within EX28DRAFT_3403at 72.645 kb on + strand, within EX28DRAFT_3403at 72.646 kb on - strand, within EX28DRAFT_3403at 72.646 kb on - strand, within EX28DRAFT_3403at 72.646 kb on - strand, within EX28DRAFT_3403at 72.646 kb on - strand, within EX28DRAFT_3403at 72.790 kb on - strandat 72.796 kb on + strandat 72.897 kb on + strandat 73.017 kb on - strand, within EX28DRAFT_3404at 73.025 kb on + strand, within EX28DRAFT_3404at 73.025 kb on + strand, within EX28DRAFT_3404at 73.035 kb on - strand, within EX28DRAFT_3404at 73.098 kb on + strand, within EX28DRAFT_3404at 73.140 kb on - strand, within EX28DRAFT_3404at 73.224 kb on - strand, within EX28DRAFT_3404at 73.227 kb on - strand, within EX28DRAFT_3404at 73.457 kb on + strand, within EX28DRAFT_3404at 73.457 kb on + strand, within EX28DRAFT_3404at 73.457 kb on + strand, within EX28DRAFT_3404at 73.458 kb on - strand, within EX28DRAFT_3404at 73.523 kb on + strand, within EX28DRAFT_3404at 73.523 kb on + strand, within EX28DRAFT_3404at 73.524 kb on - strand, within EX28DRAFT_3404at 73.524 kb on - strand, within EX28DRAFT_3404at 73.524 kb on - strand, within EX28DRAFT_3404at 73.524 kb on - strand, within EX28DRAFT_3404at 73.649 kb on - strand, within EX28DRAFT_3404at 73.649 kb on - strand, within EX28DRAFT_3404at 73.677 kb on - strand, within EX28DRAFT_3404at 73.737 kb on + strand, within EX28DRAFT_3404at 73.737 kb on + strand, within EX28DRAFT_3404at 73.737 kb on + strand, within EX28DRAFT_3404at 73.756 kb on + strand, within EX28DRAFT_3404at 73.756 kb on + strand, within EX28DRAFT_3404

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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71,644 + -0.5
71,646 + -2.2
71,646 + -2.4
71,692 + -2.9
71,693 - +0.1
72,050 + EX28DRAFT_3402 0.64 -0.0
72,051 - EX28DRAFT_3402 0.65 -0.4
72,051 - EX28DRAFT_3402 0.65 -0.1
72,089 + EX28DRAFT_3402 0.71 -0.6
72,103 + EX28DRAFT_3402 0.74 +0.7
72,104 - EX28DRAFT_3402 0.74 -0.5
72,104 - EX28DRAFT_3402 0.74 -0.1
72,108 - EX28DRAFT_3402 0.75 +2.1
72,114 - EX28DRAFT_3402 0.76 -0.2
72,233 + +0.1
72,233 + -0.1
72,237 - +1.0
72,237 - +0.2
72,240 + +0.0
72,299 + +0.1
72,299 + -0.9
72,300 - -2.2
72,300 - -1.3
72,300 - +0.7
72,305 + -0.2
72,305 + -0.2
72,306 - +0.1
72,364 + -0.3
72,364 + +0.5
72,365 - -0.7
72,388 + -0.2
72,454 - +0.3
72,474 + +0.2
72,485 + +0.3
72,485 + +0.7
72,486 - -0.1
72,486 - +0.1
72,488 - -0.7
72,551 - +0.6
72,567 - +0.5
72,591 + -1.7
72,592 - -0.3
72,592 - +0.3
72,615 + EX28DRAFT_3403 0.20 -0.1
72,616 - EX28DRAFT_3403 0.21 +1.1
72,645 + EX28DRAFT_3403 0.35 +0.5
72,645 + EX28DRAFT_3403 0.35 +0.0
72,645 + EX28DRAFT_3403 0.35 +0.5
72,646 - EX28DRAFT_3403 0.35 +2.1
72,646 - EX28DRAFT_3403 0.35 +0.0
72,646 - EX28DRAFT_3403 0.35 +0.5
72,646 - EX28DRAFT_3403 0.35 +0.1
72,790 - +0.2
72,796 + -0.2
72,897 + -1.7
73,017 - EX28DRAFT_3404 0.12 -0.4
73,025 + EX28DRAFT_3404 0.13 -1.4
73,025 + EX28DRAFT_3404 0.13 -0.6
73,035 - EX28DRAFT_3404 0.14 -0.5
73,098 + EX28DRAFT_3404 0.18 -0.4
73,140 - EX28DRAFT_3404 0.22 -0.2
73,224 - EX28DRAFT_3404 0.28 -0.2
73,227 - EX28DRAFT_3404 0.28 -0.3
73,457 + EX28DRAFT_3404 0.45 -0.1
73,457 + EX28DRAFT_3404 0.45 -0.3
73,457 + EX28DRAFT_3404 0.45 -2.7
73,458 - EX28DRAFT_3404 0.45 -0.6
73,523 + EX28DRAFT_3404 0.50 -0.8
73,523 + EX28DRAFT_3404 0.50 +0.4
73,524 - EX28DRAFT_3404 0.50 +2.1
73,524 - EX28DRAFT_3404 0.50 +1.6
73,524 - EX28DRAFT_3404 0.50 -1.1
73,524 - EX28DRAFT_3404 0.50 -0.1
73,649 - EX28DRAFT_3404 0.60 +0.4
73,649 - EX28DRAFT_3404 0.60 -0.8
73,677 - EX28DRAFT_3404 0.62 -0.3
73,737 + EX28DRAFT_3404 0.66 -0.5
73,737 + EX28DRAFT_3404 0.66 -0.1
73,737 + EX28DRAFT_3404 0.66 -0.2
73,756 + EX28DRAFT_3404 0.68 -0.2
73,756 + EX28DRAFT_3404 0.68 +0.7

Or see this region's nucleotide sequence