Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3401

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3400 and EX28DRAFT_3401 are separated by 190 nucleotidesEX28DRAFT_3401 and EX28DRAFT_3402 overlap by 7 nucleotidesEX28DRAFT_3402 and EX28DRAFT_3403 are separated by 324 nucleotides EX28DRAFT_3400: EX28DRAFT_3400 - 2',3'-cyclic-nucleotide 2'-phosphodiesterase, at 68,823 to 70,766 _3400 EX28DRAFT_3401: EX28DRAFT_3401 - 3'(2'),5'-bisphosphate nucleotidase, bacterial, at 70,957 to 71,697 _3401 EX28DRAFT_3402: EX28DRAFT_3402 - conserved hypothetical protein YtfJ-family, TIGR01626, at 71,691 to 72,248 _3402 EX28DRAFT_3403: EX28DRAFT_3403 - Protein of unknown function (DUF1107), at 72,573 to 72,779 _3403 Position (kb) 70 71 72Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 70.039 kb on + strand, within EX28DRAFT_3400at 70.040 kb on - strand, within EX28DRAFT_3400at 70.144 kb on + strand, within EX28DRAFT_3400at 70.145 kb on - strand, within EX28DRAFT_3400at 70.394 kb on - strand, within EX28DRAFT_3400at 70.394 kb on - strand, within EX28DRAFT_3400at 70.439 kb on + strand, within EX28DRAFT_3400at 70.440 kb on - strand, within EX28DRAFT_3400at 70.465 kb on + strand, within EX28DRAFT_3400at 70.466 kb on - strand, within EX28DRAFT_3400at 70.510 kb on + strand, within EX28DRAFT_3400at 70.510 kb on + strand, within EX28DRAFT_3400at 70.608 kb on + strandat 70.643 kb on - strandat 70.646 kb on - strandat 70.692 kb on - strandat 70.701 kb on + strandat 70.754 kb on + strandat 70.804 kb on + strandat 70.804 kb on + strandat 70.808 kb on + strandat 70.809 kb on - strandat 70.903 kb on - strandat 70.908 kb on - strandat 71.452 kb on + strand, within EX28DRAFT_3401at 71.452 kb on + strand, within EX28DRAFT_3401at 71.644 kb on + strandat 71.646 kb on + strandat 71.646 kb on + strandat 71.692 kb on + strandat 71.693 kb on - strandat 72.050 kb on + strand, within EX28DRAFT_3402at 72.051 kb on - strand, within EX28DRAFT_3402at 72.051 kb on - strand, within EX28DRAFT_3402at 72.089 kb on + strand, within EX28DRAFT_3402at 72.103 kb on + strand, within EX28DRAFT_3402at 72.104 kb on - strand, within EX28DRAFT_3402at 72.104 kb on - strand, within EX28DRAFT_3402at 72.108 kb on - strand, within EX28DRAFT_3402at 72.114 kb on - strand, within EX28DRAFT_3402at 72.233 kb on + strandat 72.233 kb on + strandat 72.237 kb on - strandat 72.237 kb on - strandat 72.240 kb on + strandat 72.299 kb on + strandat 72.299 kb on + strandat 72.300 kb on - strandat 72.300 kb on - strandat 72.300 kb on - strandat 72.305 kb on + strandat 72.305 kb on + strandat 72.306 kb on - strandat 72.364 kb on + strandat 72.364 kb on + strandat 72.365 kb on - strandat 72.388 kb on + strandat 72.454 kb on - strandat 72.474 kb on + strandat 72.485 kb on + strandat 72.485 kb on + strandat 72.486 kb on - strandat 72.486 kb on - strandat 72.488 kb on - strandat 72.551 kb on - strandat 72.567 kb on - strandat 72.591 kb on + strandat 72.592 kb on - strandat 72.592 kb on - strandat 72.615 kb on + strand, within EX28DRAFT_3403at 72.616 kb on - strand, within EX28DRAFT_3403at 72.645 kb on + strand, within EX28DRAFT_3403at 72.645 kb on + strand, within EX28DRAFT_3403at 72.645 kb on + strand, within EX28DRAFT_3403at 72.646 kb on - strand, within EX28DRAFT_3403at 72.646 kb on - strand, within EX28DRAFT_3403at 72.646 kb on - strand, within EX28DRAFT_3403at 72.646 kb on - strand, within EX28DRAFT_3403

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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70,039 + EX28DRAFT_3400 0.63 -0.1
70,040 - EX28DRAFT_3400 0.63 -0.3
70,144 + EX28DRAFT_3400 0.68 -0.2
70,145 - EX28DRAFT_3400 0.68 +0.1
70,394 - EX28DRAFT_3400 0.81 +1.3
70,394 - EX28DRAFT_3400 0.81 -0.7
70,439 + EX28DRAFT_3400 0.83 +0.1
70,440 - EX28DRAFT_3400 0.83 +0.2
70,465 + EX28DRAFT_3400 0.84 -0.2
70,466 - EX28DRAFT_3400 0.85 +0.2
70,510 + EX28DRAFT_3400 0.87 -0.3
70,510 + EX28DRAFT_3400 0.87 +0.7
70,608 + +0.3
70,643 - -2.4
70,646 - -0.6
70,692 - -1.6
70,701 + -0.4
70,754 + -0.5
70,804 + -0.1
70,804 + -0.3
70,808 + +0.3
70,809 - -0.1
70,903 - -0.8
70,908 - -1.4
71,452 + EX28DRAFT_3401 0.67 -0.8
71,452 + EX28DRAFT_3401 0.67 -2.9
71,644 + -0.5
71,646 + -2.2
71,646 + -2.4
71,692 + -2.9
71,693 - +0.1
72,050 + EX28DRAFT_3402 0.64 -0.0
72,051 - EX28DRAFT_3402 0.65 -0.4
72,051 - EX28DRAFT_3402 0.65 -0.1
72,089 + EX28DRAFT_3402 0.71 -0.6
72,103 + EX28DRAFT_3402 0.74 +0.7
72,104 - EX28DRAFT_3402 0.74 -0.5
72,104 - EX28DRAFT_3402 0.74 -0.1
72,108 - EX28DRAFT_3402 0.75 +2.1
72,114 - EX28DRAFT_3402 0.76 -0.2
72,233 + +0.1
72,233 + -0.1
72,237 - +1.0
72,237 - +0.2
72,240 + +0.0
72,299 + +0.1
72,299 + -0.9
72,300 - -2.2
72,300 - -1.3
72,300 - +0.7
72,305 + -0.2
72,305 + -0.2
72,306 - +0.1
72,364 + -0.3
72,364 + +0.5
72,365 - -0.7
72,388 + -0.2
72,454 - +0.3
72,474 + +0.2
72,485 + +0.3
72,485 + +0.7
72,486 - -0.1
72,486 - +0.1
72,488 - -0.7
72,551 - +0.6
72,567 - +0.5
72,591 + -1.7
72,592 - -0.3
72,592 - +0.3
72,615 + EX28DRAFT_3403 0.20 -0.1
72,616 - EX28DRAFT_3403 0.21 +1.1
72,645 + EX28DRAFT_3403 0.35 +0.5
72,645 + EX28DRAFT_3403 0.35 +0.0
72,645 + EX28DRAFT_3403 0.35 +0.5
72,646 - EX28DRAFT_3403 0.35 +2.1
72,646 - EX28DRAFT_3403 0.35 +0.0
72,646 - EX28DRAFT_3403 0.35 +0.5
72,646 - EX28DRAFT_3403 0.35 +0.1

Or see this region's nucleotide sequence