Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3367 and EX28DRAFT_3368 overlap by 8 nucleotides EX28DRAFT_3368 and EX28DRAFT_3369 are separated by 85 nucleotides EX28DRAFT_3369 and EX28DRAFT_3370 are separated by 74 nucleotides
EX28DRAFT_3367: EX28DRAFT_3367 - DNA mismatch repair protein MutL, at 34,716 to 36,560
_3367
EX28DRAFT_3368: EX28DRAFT_3368 - tRNA dimethylallyltransferase, at 36,553 to 37,503
_3368
EX28DRAFT_3369: EX28DRAFT_3369 - RNA chaperone Hfq, at 37,589 to 37,900
_3369
EX28DRAFT_3370: EX28DRAFT_3370 - GTP-binding protein HflX, at 37,975 to 39,255
_3370
Position (kb) 36
37
38 Strain fitness (log2 ratio) -2
-1
0
1 at 35.586 kb on + strand, within EX28DRAFT_3367 at 35.586 kb on + strand, within EX28DRAFT_3367 at 35.587 kb on - strand, within EX28DRAFT_3367 at 35.617 kb on + strand, within EX28DRAFT_3367 at 35.618 kb on - strand, within EX28DRAFT_3367 at 35.618 kb on - strand, within EX28DRAFT_3367 at 35.678 kb on + strand, within EX28DRAFT_3367 at 35.679 kb on - strand, within EX28DRAFT_3367 at 35.928 kb on + strand, within EX28DRAFT_3367 at 36.187 kb on + strand, within EX28DRAFT_3367 at 36.208 kb on + strand, within EX28DRAFT_3367 at 36.509 kb on - strand at 36.511 kb on + strand at 36.512 kb on - strand at 37.322 kb on - strand, within EX28DRAFT_3368 at 37.342 kb on + strand, within EX28DRAFT_3368 at 37.509 kb on + strand at 37.509 kb on + strand at 37.509 kb on + strand at 37.522 kb on + strand at 37.555 kb on + strand at 37.831 kb on + strand, within EX28DRAFT_3369 at 37.988 kb on - strand at 38.023 kb on + strand at 38.024 kb on - strand at 38.043 kb on + strand at 38.044 kb on - strand at 38.121 kb on + strand, within EX28DRAFT_3370 at 38.122 kb on - strand, within EX28DRAFT_3370 at 38.140 kb on + strand, within EX28DRAFT_3370 at 38.157 kb on + strand, within EX28DRAFT_3370 at 38.297 kb on + strand, within EX28DRAFT_3370 at 38.298 kb on - strand, within EX28DRAFT_3370 at 38.322 kb on + strand, within EX28DRAFT_3370
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 35,586 + EX28DRAFT_3367 0.47 -1.0 35,586 + EX28DRAFT_3367 0.47 +1.0 35,587 - EX28DRAFT_3367 0.47 -0.0 35,617 + EX28DRAFT_3367 0.49 +0.4 35,618 - EX28DRAFT_3367 0.49 -1.1 35,618 - EX28DRAFT_3367 0.49 -1.1 35,678 + EX28DRAFT_3367 0.52 +0.4 35,679 - EX28DRAFT_3367 0.52 -0.3 35,928 + EX28DRAFT_3367 0.66 -0.8 36,187 + EX28DRAFT_3367 0.80 +0.1 36,208 + EX28DRAFT_3367 0.81 -0.4 36,509 - -0.8 36,511 + +0.2 36,512 - -1.9 37,322 - EX28DRAFT_3368 0.81 -2.0 37,342 + EX28DRAFT_3368 0.83 -1.6 37,509 + -0.6 37,509 + -1.7 37,509 + +1.0 37,522 + -1.3 37,555 + -0.4 37,831 + EX28DRAFT_3369 0.78 +0.6 37,988 - -0.3 38,023 + -0.4 38,024 - -1.5 38,043 + +1.2 38,044 - +0.1 38,121 + EX28DRAFT_3370 0.11 -0.3 38,122 - EX28DRAFT_3370 0.11 -0.0 38,140 + EX28DRAFT_3370 0.13 +0.1 38,157 + EX28DRAFT_3370 0.14 +0.1 38,297 + EX28DRAFT_3370 0.25 -0.4 38,298 - EX28DRAFT_3370 0.25 -0.3 38,322 + EX28DRAFT_3370 0.27 -0.1
Or see this region's nucleotide sequence