Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3367

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3366 and EX28DRAFT_3367 are separated by 9 nucleotidesEX28DRAFT_3367 and EX28DRAFT_3368 overlap by 8 nucleotides EX28DRAFT_3366: EX28DRAFT_3366 - N-acetylmuramoyl-L-alanine amidase, at 33,300 to 34,706 _3366 EX28DRAFT_3367: EX28DRAFT_3367 - DNA mismatch repair protein MutL, at 34,716 to 36,560 _3367 EX28DRAFT_3368: EX28DRAFT_3368 - tRNA dimethylallyltransferase, at 36,553 to 37,503 _3368 Position (kb) 34 35 36 37Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 33.720 kb on + strand, within EX28DRAFT_3366at 33.720 kb on + strand, within EX28DRAFT_3366at 33.734 kb on + strand, within EX28DRAFT_3366at 33.803 kb on + strand, within EX28DRAFT_3366at 33.806 kb on - strand, within EX28DRAFT_3366at 33.806 kb on - strand, within EX28DRAFT_3366at 33.807 kb on + strand, within EX28DRAFT_3366at 33.807 kb on + strand, within EX28DRAFT_3366at 33.808 kb on - strand, within EX28DRAFT_3366at 33.808 kb on - strand, within EX28DRAFT_3366at 33.808 kb on - strand, within EX28DRAFT_3366at 33.809 kb on + strand, within EX28DRAFT_3366at 33.809 kb on + strand, within EX28DRAFT_3366at 33.809 kb on + strand, within EX28DRAFT_3366at 33.809 kb on + strand, within EX28DRAFT_3366at 33.810 kb on - strand, within EX28DRAFT_3366at 33.810 kb on - strand, within EX28DRAFT_3366at 33.810 kb on - strand, within EX28DRAFT_3366at 33.888 kb on - strand, within EX28DRAFT_3366at 34.070 kb on + strand, within EX28DRAFT_3366at 34.071 kb on - strand, within EX28DRAFT_3366at 34.071 kb on - strand, within EX28DRAFT_3366at 34.071 kb on - strand, within EX28DRAFT_3366at 34.104 kb on + strand, within EX28DRAFT_3366at 34.104 kb on + strand, within EX28DRAFT_3366at 34.105 kb on - strand, within EX28DRAFT_3366at 34.109 kb on + strand, within EX28DRAFT_3366at 34.110 kb on - strand, within EX28DRAFT_3366at 34.110 kb on - strand, within EX28DRAFT_3366at 34.338 kb on + strand, within EX28DRAFT_3366at 34.411 kb on + strand, within EX28DRAFT_3366at 34.445 kb on + strand, within EX28DRAFT_3366at 34.445 kb on + strand, within EX28DRAFT_3366at 34.445 kb on + strand, within EX28DRAFT_3366at 34.446 kb on - strand, within EX28DRAFT_3366at 34.524 kb on - strand, within EX28DRAFT_3366at 34.529 kb on + strand, within EX28DRAFT_3366at 34.593 kb on + strandat 34.594 kb on - strandat 34.594 kb on - strandat 34.594 kb on - strandat 34.704 kb on + strandat 34.704 kb on + strandat 35.039 kb on - strand, within EX28DRAFT_3367at 35.169 kb on + strand, within EX28DRAFT_3367at 35.169 kb on + strand, within EX28DRAFT_3367at 35.196 kb on - strand, within EX28DRAFT_3367at 35.484 kb on + strand, within EX28DRAFT_3367at 35.485 kb on - strand, within EX28DRAFT_3367at 35.586 kb on + strand, within EX28DRAFT_3367at 35.586 kb on + strand, within EX28DRAFT_3367at 35.587 kb on - strand, within EX28DRAFT_3367at 35.617 kb on + strand, within EX28DRAFT_3367at 35.618 kb on - strand, within EX28DRAFT_3367at 35.618 kb on - strand, within EX28DRAFT_3367at 35.678 kb on + strand, within EX28DRAFT_3367at 35.679 kb on - strand, within EX28DRAFT_3367at 35.928 kb on + strand, within EX28DRAFT_3367at 36.187 kb on + strand, within EX28DRAFT_3367at 36.208 kb on + strand, within EX28DRAFT_3367at 36.509 kb on - strandat 36.511 kb on + strandat 36.512 kb on - strandat 37.322 kb on - strand, within EX28DRAFT_3368at 37.342 kb on + strand, within EX28DRAFT_3368at 37.509 kb on + strandat 37.509 kb on + strandat 37.509 kb on + strandat 37.522 kb on + strandat 37.555 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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33,720 + EX28DRAFT_3366 0.30 -0.0
33,720 + EX28DRAFT_3366 0.30 -0.4
33,734 + EX28DRAFT_3366 0.31 -0.1
33,803 + EX28DRAFT_3366 0.36 +0.1
33,806 - EX28DRAFT_3366 0.36 -0.6
33,806 - EX28DRAFT_3366 0.36 -0.1
33,807 + EX28DRAFT_3366 0.36 +0.4
33,807 + EX28DRAFT_3366 0.36 -1.1
33,808 - EX28DRAFT_3366 0.36 -0.6
33,808 - EX28DRAFT_3366 0.36 -0.4
33,808 - EX28DRAFT_3366 0.36 -1.1
33,809 + EX28DRAFT_3366 0.36 +0.7
33,809 + EX28DRAFT_3366 0.36 -0.1
33,809 + EX28DRAFT_3366 0.36 -0.4
33,809 + EX28DRAFT_3366 0.36 -0.1
33,810 - EX28DRAFT_3366 0.36 -1.2
33,810 - EX28DRAFT_3366 0.36 -0.3
33,810 - EX28DRAFT_3366 0.36 -0.6
33,888 - EX28DRAFT_3366 0.42 -0.3
34,070 + EX28DRAFT_3366 0.55 -0.3
34,071 - EX28DRAFT_3366 0.55 -0.7
34,071 - EX28DRAFT_3366 0.55 -0.4
34,071 - EX28DRAFT_3366 0.55 -1.6
34,104 + EX28DRAFT_3366 0.57 -0.5
34,104 + EX28DRAFT_3366 0.57 +1.7
34,105 - EX28DRAFT_3366 0.57 +0.6
34,109 + EX28DRAFT_3366 0.57 -0.1
34,110 - EX28DRAFT_3366 0.58 -0.1
34,110 - EX28DRAFT_3366 0.58 -0.1
34,338 + EX28DRAFT_3366 0.74 +0.6
34,411 + EX28DRAFT_3366 0.79 +0.1
34,445 + EX28DRAFT_3366 0.81 +0.0
34,445 + EX28DRAFT_3366 0.81 +1.0
34,445 + EX28DRAFT_3366 0.81 -1.6
34,446 - EX28DRAFT_3366 0.81 -0.6
34,524 - EX28DRAFT_3366 0.87 +1.1
34,529 + EX28DRAFT_3366 0.87 -0.1
34,593 + -0.2
34,594 - -1.5
34,594 - +0.8
34,594 - -0.7
34,704 + +0.5
34,704 + -0.3
35,039 - EX28DRAFT_3367 0.18 +0.5
35,169 + EX28DRAFT_3367 0.25 +0.1
35,169 + EX28DRAFT_3367 0.25 -0.5
35,196 - EX28DRAFT_3367 0.26 -1.5
35,484 + EX28DRAFT_3367 0.42 -4.1
35,485 - EX28DRAFT_3367 0.42 -0.7
35,586 + EX28DRAFT_3367 0.47 -1.0
35,586 + EX28DRAFT_3367 0.47 +1.0
35,587 - EX28DRAFT_3367 0.47 -0.0
35,617 + EX28DRAFT_3367 0.49 +0.4
35,618 - EX28DRAFT_3367 0.49 -1.1
35,618 - EX28DRAFT_3367 0.49 -1.1
35,678 + EX28DRAFT_3367 0.52 +0.4
35,679 - EX28DRAFT_3367 0.52 -0.3
35,928 + EX28DRAFT_3367 0.66 -0.8
36,187 + EX28DRAFT_3367 0.80 +0.1
36,208 + EX28DRAFT_3367 0.81 -0.4
36,509 - -0.8
36,511 + +0.2
36,512 - -1.9
37,322 - EX28DRAFT_3368 0.81 -2.0
37,342 + EX28DRAFT_3368 0.83 -1.6
37,509 + -0.6
37,509 + -1.7
37,509 + +1.0
37,522 + -1.3
37,555 + -0.4

Or see this region's nucleotide sequence