Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3351 and EX28DRAFT_3352 are separated by 29 nucleotides EX28DRAFT_3352 and EX28DRAFT_3353 are separated by 10 nucleotides EX28DRAFT_3353 and EX28DRAFT_3354 are separated by 10 nucleotides EX28DRAFT_3354 and EX28DRAFT_3355 overlap by 8 nucleotides
EX28DRAFT_3351: EX28DRAFT_3351 - Transcriptional regulator, at 17,933 to 18,808
_3351
EX28DRAFT_3352: EX28DRAFT_3352 - succinate dehydrogenase subunit D (EC 1.3.5.1), at 18,838 to 19,197
_3352
EX28DRAFT_3353: EX28DRAFT_3353 - Fumarate reductase subunit C, at 19,208 to 19,603
_3353
EX28DRAFT_3354: EX28DRAFT_3354 - succinate dehydrogenase and fumarate reductase iron-sulfur protein, at 19,614 to 20,348
_3354
EX28DRAFT_3355: EX28DRAFT_3355 - succinate dehydrogenase subunit A (EC 1.3.5.1), at 20,341 to 22,131
_3355
Position (kb) 19
20 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 18.220 kb on + strand, within EX28DRAFT_3351 at 18.291 kb on - strand, within EX28DRAFT_3351 at 18.298 kb on + strand, within EX28DRAFT_3351 at 18.298 kb on + strand, within EX28DRAFT_3351 at 18.322 kb on + strand, within EX28DRAFT_3351 at 18.323 kb on - strand, within EX28DRAFT_3351 at 18.359 kb on + strand, within EX28DRAFT_3351 at 18.360 kb on - strand, within EX28DRAFT_3351 at 18.439 kb on + strand, within EX28DRAFT_3351 at 18.450 kb on + strand, within EX28DRAFT_3351 at 18.490 kb on + strand, within EX28DRAFT_3351 at 18.507 kb on - strand, within EX28DRAFT_3351 at 18.507 kb on - strand, within EX28DRAFT_3351 at 18.667 kb on - strand, within EX28DRAFT_3351 at 18.807 kb on - strand at 18.893 kb on + strand, within EX28DRAFT_3352 at 18.893 kb on + strand, within EX28DRAFT_3352 at 18.893 kb on + strand, within EX28DRAFT_3352 at 18.894 kb on - strand, within EX28DRAFT_3352 at 19.083 kb on + strand, within EX28DRAFT_3352 at 19.274 kb on - strand, within EX28DRAFT_3353 at 19.471 kb on - strand, within EX28DRAFT_3353 at 19.528 kb on - strand, within EX28DRAFT_3353 at 19.581 kb on + strand at 19.581 kb on + strand at 19.582 kb on - strand at 19.582 kb on - strand at 19.582 kb on - strand at 19.582 kb on - strand at 19.615 kb on + strand at 19.772 kb on + strand, within EX28DRAFT_3354 at 19.772 kb on + strand, within EX28DRAFT_3354 at 19.772 kb on + strand, within EX28DRAFT_3354 at 19.773 kb on - strand, within EX28DRAFT_3354 at 19.990 kb on + strand, within EX28DRAFT_3354 at 19.991 kb on - strand, within EX28DRAFT_3354 at 19.998 kb on - strand, within EX28DRAFT_3354 at 20.082 kb on - strand, within EX28DRAFT_3354 at 20.095 kb on + strand, within EX28DRAFT_3354 at 20.114 kb on + strand, within EX28DRAFT_3354 at 20.115 kb on - strand, within EX28DRAFT_3354 at 20.189 kb on - strand, within EX28DRAFT_3354 at 20.269 kb on + strand, within EX28DRAFT_3354 at 20.270 kb on - strand, within EX28DRAFT_3354 at 20.309 kb on - strand at 20.401 kb on - strand at 20.401 kb on - strand at 20.436 kb on - strand at 20.436 kb on - strand at 20.577 kb on + strand, within EX28DRAFT_3355 at 20.577 kb on + strand, within EX28DRAFT_3355 at 20.578 kb on - strand, within EX28DRAFT_3355 at 20.578 kb on - strand, within EX28DRAFT_3355
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 18,220 + EX28DRAFT_3351 0.33 +0.3 18,291 - EX28DRAFT_3351 0.41 +0.5 18,298 + EX28DRAFT_3351 0.42 -0.6 18,298 + EX28DRAFT_3351 0.42 -0.8 18,322 + EX28DRAFT_3351 0.44 -1.7 18,323 - EX28DRAFT_3351 0.45 +0.3 18,359 + EX28DRAFT_3351 0.49 +0.5 18,360 - EX28DRAFT_3351 0.49 +0.2 18,439 + EX28DRAFT_3351 0.58 -0.6 18,450 + EX28DRAFT_3351 0.59 -0.0 18,490 + EX28DRAFT_3351 0.64 +0.9 18,507 - EX28DRAFT_3351 0.66 +0.2 18,507 - EX28DRAFT_3351 0.66 +1.1 18,667 - EX28DRAFT_3351 0.84 +0.1 18,807 - -0.2 18,893 + EX28DRAFT_3352 0.15 -0.4 18,893 + EX28DRAFT_3352 0.15 -0.4 18,893 + EX28DRAFT_3352 0.15 +0.1 18,894 - EX28DRAFT_3352 0.16 -0.1 19,083 + EX28DRAFT_3352 0.68 -0.1 19,274 - EX28DRAFT_3353 0.17 +1.1 19,471 - EX28DRAFT_3353 0.66 -0.3 19,528 - EX28DRAFT_3353 0.81 +0.7 19,581 + -0.8 19,581 + -0.4 19,582 - +0.4 19,582 - -0.5 19,582 - -0.1 19,582 - -0.4 19,615 + -0.5 19,772 + EX28DRAFT_3354 0.21 -0.3 19,772 + EX28DRAFT_3354 0.21 +0.3 19,772 + EX28DRAFT_3354 0.21 -0.7 19,773 - EX28DRAFT_3354 0.22 -0.7 19,990 + EX28DRAFT_3354 0.51 +0.2 19,991 - EX28DRAFT_3354 0.51 -0.2 19,998 - EX28DRAFT_3354 0.52 -0.1 20,082 - EX28DRAFT_3354 0.64 -0.2 20,095 + EX28DRAFT_3354 0.65 -0.3 20,114 + EX28DRAFT_3354 0.68 -0.1 20,115 - EX28DRAFT_3354 0.68 -3.6 20,189 - EX28DRAFT_3354 0.78 +0.3 20,269 + EX28DRAFT_3354 0.89 -0.4 20,270 - EX28DRAFT_3354 0.89 +1.6 20,309 - -0.5 20,401 - +0.1 20,401 - +0.0 20,436 - +1.3 20,436 - -0.7 20,577 + EX28DRAFT_3355 0.13 +0.4 20,577 + EX28DRAFT_3355 0.13 -0.1 20,578 - EX28DRAFT_3355 0.13 +0.1 20,578 - EX28DRAFT_3355 0.13 +0.3
Or see this region's nucleotide sequence