Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3331

Experiment: MS_media with m-arsenite 1 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_3330 and EX28DRAFT_3331 are separated by 36 nucleotidesEX28DRAFT_3331 and EX28DRAFT_3332 overlap by 4 nucleotidesEX28DRAFT_3332 and EX28DRAFT_3333 are separated by 49 nucleotides EX28DRAFT_3330: EX28DRAFT_3330 - AraC-type DNA-binding domain-containing proteins, at 843 to 1,688 _3330 EX28DRAFT_3331: EX28DRAFT_3331 - Putative threonine efflux protein, at 1,725 to 2,315 _3331 EX28DRAFT_3332: EX28DRAFT_3332 - transcriptional regulator, TetR family, at 2,312 to 2,887 _3332 EX28DRAFT_3333: EX28DRAFT_3333 - Thiol:disulfide interchange protein, at 2,937 to 4,652 _3333 Position (kb) 1 2 3Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 0.809 kb on - strandat 0.899 kb on + strandat 0.945 kb on - strand, within EX28DRAFT_3330at 0.948 kb on + strand, within EX28DRAFT_3330at 0.949 kb on - strand, within EX28DRAFT_3330at 1.085 kb on + strand, within EX28DRAFT_3330at 1.085 kb on + strand, within EX28DRAFT_3330at 1.089 kb on + strand, within EX28DRAFT_3330at 1.101 kb on + strand, within EX28DRAFT_3330at 1.102 kb on - strand, within EX28DRAFT_3330at 1.102 kb on - strand, within EX28DRAFT_3330at 1.102 kb on - strand, within EX28DRAFT_3330at 1.102 kb on - strand, within EX28DRAFT_3330at 1.144 kb on - strand, within EX28DRAFT_3330at 1.164 kb on + strand, within EX28DRAFT_3330at 1.164 kb on + strand, within EX28DRAFT_3330at 1.165 kb on - strand, within EX28DRAFT_3330at 1.330 kb on + strand, within EX28DRAFT_3330at 1.331 kb on - strand, within EX28DRAFT_3330at 1.343 kb on - strand, within EX28DRAFT_3330at 1.503 kb on - strand, within EX28DRAFT_3330at 1.624 kb on - strandat 1.628 kb on + strandat 1.629 kb on - strandat 1.629 kb on - strandat 1.710 kb on - strandat 1.829 kb on + strand, within EX28DRAFT_3331at 1.835 kb on - strand, within EX28DRAFT_3331at 1.835 kb on - strand, within EX28DRAFT_3331at 1.936 kb on + strand, within EX28DRAFT_3331at 1.937 kb on - strand, within EX28DRAFT_3331at 2.313 kb on + strandat 2.314 kb on - strandat 2.352 kb on - strandat 2.356 kb on + strandat 2.357 kb on - strandat 2.638 kb on + strand, within EX28DRAFT_3332at 2.704 kb on + strand, within EX28DRAFT_3332at 2.739 kb on + strand, within EX28DRAFT_3332at 2.739 kb on + strand, within EX28DRAFT_3332at 2.739 kb on + strand, within EX28DRAFT_3332at 2.739 kb on + strand, within EX28DRAFT_3332at 2.740 kb on - strand, within EX28DRAFT_3332at 2.755 kb on + strand, within EX28DRAFT_3332at 2.915 kb on + strandat 2.916 kb on - strandat 2.985 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
remove
809 - +0.2
899 + -0.2
945 - EX28DRAFT_3330 0.12 +0.4
948 + EX28DRAFT_3330 0.12 -0.2
949 - EX28DRAFT_3330 0.13 -0.5
1,085 + EX28DRAFT_3330 0.29 -1.3
1,085 + EX28DRAFT_3330 0.29 +0.0
1,089 + EX28DRAFT_3330 0.29 +0.7
1,101 + EX28DRAFT_3330 0.30 -0.3
1,102 - EX28DRAFT_3330 0.31 -0.1
1,102 - EX28DRAFT_3330 0.31 -0.1
1,102 - EX28DRAFT_3330 0.31 -0.6
1,102 - EX28DRAFT_3330 0.31 -0.0
1,144 - EX28DRAFT_3330 0.36 +0.8
1,164 + EX28DRAFT_3330 0.38 +0.3
1,164 + EX28DRAFT_3330 0.38 +2.1
1,165 - EX28DRAFT_3330 0.38 +0.8
1,330 + EX28DRAFT_3330 0.58 +0.5
1,331 - EX28DRAFT_3330 0.58 -0.1
1,343 - EX28DRAFT_3330 0.59 -0.7
1,503 - EX28DRAFT_3330 0.78 -2.8
1,624 - +0.7
1,628 + -0.6
1,629 - +0.6
1,629 - -0.3
1,710 - +0.1
1,829 + EX28DRAFT_3331 0.18 +0.1
1,835 - EX28DRAFT_3331 0.19 +1.3
1,835 - EX28DRAFT_3331 0.19 +0.2
1,936 + EX28DRAFT_3331 0.36 -1.4
1,937 - EX28DRAFT_3331 0.36 -0.2
2,313 + -0.0
2,314 - -0.2
2,352 - +0.8
2,356 + -0.3
2,357 - +0.5
2,638 + EX28DRAFT_3332 0.57 +0.2
2,704 + EX28DRAFT_3332 0.68 -0.0
2,739 + EX28DRAFT_3332 0.74 -0.4
2,739 + EX28DRAFT_3332 0.74 -1.6
2,739 + EX28DRAFT_3332 0.74 -0.3
2,739 + EX28DRAFT_3332 0.74 -0.0
2,740 - EX28DRAFT_3332 0.74 -0.8
2,755 + EX28DRAFT_3332 0.77 -0.2
2,915 + +2.0
2,916 - +0.4
2,985 - +0.1

Or see this region's nucleotide sequence