Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3319 and EX28DRAFT_3320 are separated by 303 nucleotides EX28DRAFT_3320 and EX28DRAFT_3321 are separated by 473 nucleotides
EX28DRAFT_3319: EX28DRAFT_3319 - The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family, at 619,372 to 622,485
_3319
EX28DRAFT_3320: EX28DRAFT_3320 - hypothetical protein, at 622,789 to 623,010
_3320
EX28DRAFT_3321: EX28DRAFT_3321 - ABC-type amino acid transport/signal transduction systems, periplasmic component/domain, at 623,484 to 624,509
_3321
Position (kb) 622
623
624 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 621.800 kb on - strand, within EX28DRAFT_3319 at 621.800 kb on - strand, within EX28DRAFT_3319 at 621.800 kb on - strand, within EX28DRAFT_3319 at 621.823 kb on + strand, within EX28DRAFT_3319 at 621.823 kb on + strand, within EX28DRAFT_3319 at 621.877 kb on - strand, within EX28DRAFT_3319 at 621.895 kb on - strand, within EX28DRAFT_3319 at 621.997 kb on + strand, within EX28DRAFT_3319 at 621.998 kb on - strand, within EX28DRAFT_3319 at 622.042 kb on + strand, within EX28DRAFT_3319 at 622.145 kb on - strand, within EX28DRAFT_3319 at 622.216 kb on - strand at 622.484 kb on - strand at 622.525 kb on + strand at 622.572 kb on - strand at 622.572 kb on - strand at 622.586 kb on + strand at 622.586 kb on + strand at 622.605 kb on - strand at 622.607 kb on - strand at 622.607 kb on - strand at 622.615 kb on - strand at 622.669 kb on + strand at 622.674 kb on - strand at 622.771 kb on + strand at 622.860 kb on - strand, within EX28DRAFT_3320 at 623.094 kb on + strand at 623.095 kb on - strand at 623.096 kb on + strand at 623.097 kb on - strand at 623.097 kb on - strand at 623.193 kb on + strand at 623.231 kb on - strand at 623.323 kb on + strand at 623.333 kb on + strand at 623.334 kb on - strand at 623.390 kb on + strand at 623.403 kb on + strand at 623.430 kb on + strand at 623.431 kb on - strand at 623.451 kb on + strand at 623.452 kb on - strand at 623.452 kb on - strand at 623.483 kb on + strand at 623.632 kb on - strand, within EX28DRAFT_3321 at 623.720 kb on - strand, within EX28DRAFT_3321 at 623.720 kb on - strand, within EX28DRAFT_3321 at 623.724 kb on + strand, within EX28DRAFT_3321 at 623.725 kb on - strand, within EX28DRAFT_3321 at 623.725 kb on - strand, within EX28DRAFT_3321 at 623.854 kb on - strand, within EX28DRAFT_3321 at 623.854 kb on - strand, within EX28DRAFT_3321 at 623.854 kb on - strand, within EX28DRAFT_3321 at 623.857 kb on - strand, within EX28DRAFT_3321 at 623.867 kb on - strand, within EX28DRAFT_3321 at 623.934 kb on - strand, within EX28DRAFT_3321 at 623.974 kb on - strand, within EX28DRAFT_3321 at 623.997 kb on + strand, within EX28DRAFT_3321 at 623.997 kb on + strand, within EX28DRAFT_3321 at 623.998 kb on - strand, within EX28DRAFT_3321 at 623.998 kb on - strand, within EX28DRAFT_3321
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 621,800 - EX28DRAFT_3319 0.78 +0.1 621,800 - EX28DRAFT_3319 0.78 +1.9 621,800 - EX28DRAFT_3319 0.78 -0.1 621,823 + EX28DRAFT_3319 0.79 +0.1 621,823 + EX28DRAFT_3319 0.79 +0.0 621,877 - EX28DRAFT_3319 0.80 +0.6 621,895 - EX28DRAFT_3319 0.81 +0.1 621,997 + EX28DRAFT_3319 0.84 +0.1 621,998 - EX28DRAFT_3319 0.84 +0.6 622,042 + EX28DRAFT_3319 0.86 -0.5 622,145 - EX28DRAFT_3319 0.89 +0.0 622,216 - +0.1 622,484 - -3.4 622,525 + -0.4 622,572 - -2.5 622,572 - -0.7 622,586 + -0.3 622,586 + -0.5 622,605 - -0.0 622,607 - +0.0 622,607 - -0.2 622,615 - -0.9 622,669 + -0.1 622,674 - +0.1 622,771 + +0.4 622,860 - EX28DRAFT_3320 0.32 -1.7 623,094 + -1.3 623,095 - -0.5 623,096 + -1.1 623,097 - +0.3 623,097 - +0.1 623,193 + +1.0 623,231 - -0.1 623,323 + -0.9 623,333 + -0.4 623,334 - -0.5 623,390 + -1.1 623,403 + -0.6 623,430 + +0.4 623,431 - -0.3 623,451 + +1.8 623,452 - +0.8 623,452 - +0.3 623,483 + -0.8 623,632 - EX28DRAFT_3321 0.14 -3.2 623,720 - EX28DRAFT_3321 0.23 +0.7 623,720 - EX28DRAFT_3321 0.23 -1.8 623,724 + EX28DRAFT_3321 0.23 -0.8 623,725 - EX28DRAFT_3321 0.23 +0.4 623,725 - EX28DRAFT_3321 0.23 +0.1 623,854 - EX28DRAFT_3321 0.36 -0.1 623,854 - EX28DRAFT_3321 0.36 -0.8 623,854 - EX28DRAFT_3321 0.36 -0.0 623,857 - EX28DRAFT_3321 0.36 +0.3 623,867 - EX28DRAFT_3321 0.37 -0.8 623,934 - EX28DRAFT_3321 0.44 +0.0 623,974 - EX28DRAFT_3321 0.48 +0.6 623,997 + EX28DRAFT_3321 0.50 +0.3 623,997 + EX28DRAFT_3321 0.50 +1.2 623,998 - EX28DRAFT_3321 0.50 +0.4 623,998 - EX28DRAFT_3321 0.50 -0.4
Or see this region's nucleotide sequence