Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3313 and EX28DRAFT_3314 are separated by 23 nucleotides EX28DRAFT_3314 and EX28DRAFT_3315 are separated by 177 nucleotides EX28DRAFT_3315 and EX28DRAFT_3316 are separated by 139 nucleotides
EX28DRAFT_3313: EX28DRAFT_3313 - putative TIM-barrel protein, nifR3 family, at 613,350 to 614,315
_3313
EX28DRAFT_3314: EX28DRAFT_3314 - Factor for inversion stimulation Fis, transcriptional activator, at 614,339 to 614,635
_3314
EX28DRAFT_3315: EX28DRAFT_3315 - Protein of unknown function (DUF2556), at 614,813 to 614,977
_3315
EX28DRAFT_3316: EX28DRAFT_3316 - diguanylate cyclase (GGDEF) domain, at 615,117 to 617,198
_3316
Position (kb) 614
615 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 613.406 kb on + strand at 613.409 kb on + strand at 613.628 kb on + strand, within EX28DRAFT_3313 at 613.757 kb on + strand, within EX28DRAFT_3313 at 613.789 kb on + strand, within EX28DRAFT_3313 at 613.957 kb on + strand, within EX28DRAFT_3313 at 613.992 kb on + strand, within EX28DRAFT_3313 at 613.992 kb on + strand, within EX28DRAFT_3313 at 613.994 kb on + strand, within EX28DRAFT_3313 at 614.067 kb on + strand, within EX28DRAFT_3313 at 614.257 kb on + strand at 614.272 kb on + strand at 614.499 kb on + strand, within EX28DRAFT_3314 at 614.637 kb on - strand at 614.647 kb on + strand at 614.726 kb on + strand at 614.727 kb on - strand at 614.768 kb on + strand at 614.768 kb on + strand at 614.769 kb on - strand at 614.771 kb on - strand at 614.771 kb on - strand at 614.817 kb on + strand at 614.821 kb on + strand at 614.822 kb on - strand at 614.822 kb on - strand at 614.822 kb on - strand at 614.822 kb on - strand at 614.826 kb on - strand at 614.895 kb on + strand, within EX28DRAFT_3315 at 614.926 kb on + strand, within EX28DRAFT_3315 at 615.060 kb on - strand at 615.106 kb on + strand at 615.132 kb on + strand at 615.132 kb on + strand at 615.132 kb on + strand at 615.183 kb on + strand at 615.184 kb on - strand at 615.260 kb on + strand at 615.336 kb on + strand, within EX28DRAFT_3316 at 615.337 kb on - strand, within EX28DRAFT_3316 at 615.358 kb on + strand, within EX28DRAFT_3316 at 615.376 kb on + strand, within EX28DRAFT_3316 at 615.421 kb on + strand, within EX28DRAFT_3316 at 615.422 kb on - strand, within EX28DRAFT_3316 at 615.476 kb on + strand, within EX28DRAFT_3316 at 615.484 kb on - strand, within EX28DRAFT_3316 at 615.484 kb on - strand, within EX28DRAFT_3316
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 613,406 + +0.8 613,409 + +0.3 613,628 + EX28DRAFT_3313 0.29 +1.5 613,757 + EX28DRAFT_3313 0.42 +0.4 613,789 + EX28DRAFT_3313 0.45 -0.3 613,957 + EX28DRAFT_3313 0.63 +1.1 613,992 + EX28DRAFT_3313 0.66 -1.1 613,992 + EX28DRAFT_3313 0.66 -0.2 613,994 + EX28DRAFT_3313 0.67 +0.3 614,067 + EX28DRAFT_3313 0.74 -0.1 614,257 + -1.5 614,272 + -1.3 614,499 + EX28DRAFT_3314 0.54 -2.1 614,637 - -2.7 614,647 + +0.0 614,726 + +1.0 614,727 - +0.4 614,768 + +0.1 614,768 + +0.1 614,769 - +0.7 614,771 - +0.5 614,771 - -1.1 614,817 + +0.3 614,821 + -0.4 614,822 - -0.2 614,822 - -1.0 614,822 - -0.5 614,822 - +0.1 614,826 - +0.1 614,895 + EX28DRAFT_3315 0.50 -0.4 614,926 + EX28DRAFT_3315 0.68 +0.5 615,060 - +0.0 615,106 + +0.0 615,132 + -0.1 615,132 + -0.1 615,132 + +0.0 615,183 + -0.2 615,184 - +0.2 615,260 + -0.6 615,336 + EX28DRAFT_3316 0.11 +0.0 615,337 - EX28DRAFT_3316 0.11 +2.1 615,358 + EX28DRAFT_3316 0.12 +0.4 615,376 + EX28DRAFT_3316 0.12 -1.0 615,421 + EX28DRAFT_3316 0.15 +0.5 615,422 - EX28DRAFT_3316 0.15 +0.5 615,476 + EX28DRAFT_3316 0.17 -1.1 615,484 - EX28DRAFT_3316 0.18 -0.3 615,484 - EX28DRAFT_3316 0.18 -2.9
Or see this region's nucleotide sequence