Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3269 and EX28DRAFT_3270 are separated by 123 nucleotides EX28DRAFT_3270 and EX28DRAFT_3271 are separated by 83 nucleotides
EX28DRAFT_3269: EX28DRAFT_3269 - valyl-tRNA synthetase (EC 6.1.1.9), at 560,232 to 563,087
_3269
EX28DRAFT_3270: EX28DRAFT_3270 - N-acetylglutamate synthase and related acetyltransferases, at 563,211 to 563,714
_3270
EX28DRAFT_3271: EX28DRAFT_3271 - Zn-dependent alcohol dehydrogenases, at 563,798 to 564,817
_3271
Position (kb) 563
564 Strain fitness (log2 ratio) -1
0
1
2
3 at 563.168 kb on + strand at 563.171 kb on + strand at 563.172 kb on - strand at 563.181 kb on + strand at 563.181 kb on + strand at 563.181 kb on + strand at 563.181 kb on + strand at 563.182 kb on - strand at 563.205 kb on - strand at 563.210 kb on + strand at 563.210 kb on + strand at 563.285 kb on - strand, within EX28DRAFT_3270 at 563.491 kb on - strand, within EX28DRAFT_3270 at 563.573 kb on + strand, within EX28DRAFT_3270 at 563.574 kb on - strand, within EX28DRAFT_3270 at 563.583 kb on + strand, within EX28DRAFT_3270 at 563.648 kb on + strand, within EX28DRAFT_3270 at 563.670 kb on - strand at 563.712 kb on + strand at 563.749 kb on - strand at 563.808 kb on + strand at 563.859 kb on - strand at 563.874 kb on + strand at 563.895 kb on + strand at 563.895 kb on + strand at 563.896 kb on - strand at 563.896 kb on - strand at 563.896 kb on - strand at 563.906 kb on + strand, within EX28DRAFT_3271 at 564.103 kb on + strand, within EX28DRAFT_3271 at 564.103 kb on + strand, within EX28DRAFT_3271 at 564.104 kb on - strand, within EX28DRAFT_3271 at 564.540 kb on - strand, within EX28DRAFT_3271
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 563,168 + +1.8 563,171 + -0.4 563,172 - -0.4 563,181 + +0.8 563,181 + +0.0 563,181 + -0.1 563,181 + +0.1 563,182 - +0.9 563,205 - +0.9 563,210 + +0.2 563,210 + -1.1 563,285 - EX28DRAFT_3270 0.15 +0.7 563,491 - EX28DRAFT_3270 0.56 +1.1 563,573 + EX28DRAFT_3270 0.72 +0.5 563,574 - EX28DRAFT_3270 0.72 +0.7 563,583 + EX28DRAFT_3270 0.74 +0.6 563,648 + EX28DRAFT_3270 0.87 -0.1 563,670 - +0.6 563,712 + +0.1 563,749 - +0.0 563,808 + +1.8 563,859 - +0.1 563,874 + -1.5 563,895 + +3.6 563,895 + +0.6 563,896 - -0.1 563,896 - +0.2 563,896 - +0.3 563,906 + EX28DRAFT_3271 0.11 -0.3 564,103 + EX28DRAFT_3271 0.30 -1.4 564,103 + EX28DRAFT_3271 0.30 -1.1 564,104 - EX28DRAFT_3271 0.30 +0.4 564,540 - EX28DRAFT_3271 0.73 +0.0
Or see this region's nucleotide sequence