Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3251 and EX28DRAFT_3252 are separated by 14 nucleotides EX28DRAFT_3252 and EX28DRAFT_3253 overlap by 4 nucleotides EX28DRAFT_3253 and EX28DRAFT_3254 overlap by 32 nucleotides EX28DRAFT_3254 and EX28DRAFT_3255 are separated by 6 nucleotides
EX28DRAFT_3251: EX28DRAFT_3251 - KpsF/GutQ family protein, at 544,697 to 545,683
_3251
EX28DRAFT_3252: EX28DRAFT_3252 - 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family, at 545,698 to 546,264
_3252
EX28DRAFT_3253: EX28DRAFT_3253 - Uncharacterized protein conserved in bacteria, at 546,261 to 546,836
_3253
EX28DRAFT_3254: EX28DRAFT_3254 - lipopolysaccharide transport periplasmic protein LptA, at 546,805 to 547,359
_3254
EX28DRAFT_3255: EX28DRAFT_3255 - ABC-type (unclassified) transport system, ATPase component, at 547,366 to 548,091
_3255
Position (kb) 546
547 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 545.320 kb on + strand, within EX28DRAFT_3251 at 545.323 kb on + strand, within EX28DRAFT_3251 at 545.323 kb on + strand, within EX28DRAFT_3251 at 545.410 kb on + strand, within EX28DRAFT_3251 at 545.493 kb on + strand, within EX28DRAFT_3251 at 545.493 kb on + strand, within EX28DRAFT_3251 at 545.493 kb on + strand, within EX28DRAFT_3251 at 545.493 kb on + strand, within EX28DRAFT_3251 at 545.493 kb on + strand, within EX28DRAFT_3251 at 545.493 kb on + strand, within EX28DRAFT_3251 at 545.493 kb on + strand, within EX28DRAFT_3251 at 545.493 kb on + strand, within EX28DRAFT_3251 at 545.602 kb on + strand at 545.602 kb on + strand at 545.646 kb on + strand at 545.646 kb on + strand at 545.650 kb on + strand at 545.650 kb on + strand at 545.650 kb on + strand at 545.650 kb on + strand at 545.650 kb on + strand at 545.650 kb on + strand at 545.650 kb on + strand at 545.650 kb on + strand at 545.650 kb on + strand at 545.650 kb on + strand at 545.650 kb on + strand at 545.650 kb on + strand at 545.650 kb on + strand at 545.676 kb on + strand at 545.681 kb on + strand at 545.681 kb on + strand at 545.824 kb on + strand, within EX28DRAFT_3252 at 545.937 kb on + strand, within EX28DRAFT_3252 at 545.937 kb on + strand, within EX28DRAFT_3252 at 546.061 kb on + strand, within EX28DRAFT_3252 at 546.714 kb on + strand, within EX28DRAFT_3253 at 546.728 kb on + strand, within EX28DRAFT_3253 at 547.353 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 545,320 + EX28DRAFT_3251 0.63 -0.1 545,323 + EX28DRAFT_3251 0.63 -1.2 545,323 + EX28DRAFT_3251 0.63 -0.2 545,410 + EX28DRAFT_3251 0.72 -0.5 545,493 + EX28DRAFT_3251 0.81 -0.5 545,493 + EX28DRAFT_3251 0.81 +0.3 545,493 + EX28DRAFT_3251 0.81 -0.3 545,493 + EX28DRAFT_3251 0.81 +0.1 545,493 + EX28DRAFT_3251 0.81 +0.5 545,493 + EX28DRAFT_3251 0.81 -1.0 545,493 + EX28DRAFT_3251 0.81 -0.3 545,493 + EX28DRAFT_3251 0.81 +0.1 545,602 + -1.4 545,602 + -0.4 545,646 + +0.0 545,646 + +0.2 545,650 + +0.0 545,650 + -0.1 545,650 + -0.4 545,650 + -0.3 545,650 + -0.5 545,650 + -0.8 545,650 + -2.1 545,650 + +0.1 545,650 + -0.3 545,650 + +1.1 545,650 + -0.1 545,650 + +0.6 545,650 + +0.3 545,676 + -0.2 545,681 + +0.7 545,681 + +0.1 545,824 + EX28DRAFT_3252 0.22 -1.8 545,937 + EX28DRAFT_3252 0.42 +0.6 545,937 + EX28DRAFT_3252 0.42 -2.1 546,061 + EX28DRAFT_3252 0.64 +0.2 546,714 + EX28DRAFT_3253 0.79 -1.1 546,728 + EX28DRAFT_3253 0.81 -4.1 547,353 + -0.1
Or see this region's nucleotide sequence