Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3207

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3205 and EX28DRAFT_3206 overlap by 7 nucleotidesEX28DRAFT_3206 and EX28DRAFT_3207 are separated by 211 nucleotidesEX28DRAFT_3207 and EX28DRAFT_3208 are separated by 7 nucleotidesEX28DRAFT_3208 and EX28DRAFT_3209 are separated by 78 nucleotides EX28DRAFT_3205: EX28DRAFT_3205 - Predicted acetyltransferase, at 504,221 to 504,724 _3205 EX28DRAFT_3206: EX28DRAFT_3206 - Putative lipid carrier protein, at 504,718 to 505,242 _3206 EX28DRAFT_3207: EX28DRAFT_3207 - Collagenase and related proteases, at 505,454 to 506,449 _3207 EX28DRAFT_3208: EX28DRAFT_3208 - Collagenase and related proteases, at 506,457 to 507,335 _3208 EX28DRAFT_3209: EX28DRAFT_3209 - luciferase family oxidoreductase, group 1, at 507,414 to 508,421 _3209 Position (kb) 505 506 507Strain fitness (log2 ratio) -2 -1 0 1 2at 504.477 kb on + strand, within EX28DRAFT_3205at 504.558 kb on + strand, within EX28DRAFT_3205at 504.605 kb on - strand, within EX28DRAFT_3205at 504.734 kb on - strandat 504.832 kb on + strand, within EX28DRAFT_3206at 504.833 kb on - strand, within EX28DRAFT_3206at 504.863 kb on + strand, within EX28DRAFT_3206at 505.249 kb on + strandat 505.263 kb on + strandat 505.263 kb on + strandat 505.263 kb on + strandat 505.263 kb on + strandat 505.263 kb on + strandat 505.263 kb on + strandat 505.264 kb on - strandat 505.264 kb on - strandat 505.264 kb on - strandat 505.264 kb on - strandat 505.264 kb on - strandat 505.264 kb on - strandat 505.264 kb on - strandat 505.266 kb on - strandat 505.334 kb on - strandat 505.342 kb on - strandat 505.342 kb on - strandat 505.364 kb on + strandat 505.365 kb on - strandat 505.373 kb on + strandat 505.374 kb on - strandat 505.438 kb on + strandat 505.438 kb on + strandat 505.493 kb on - strandat 505.526 kb on + strandat 505.526 kb on + strandat 505.526 kb on + strandat 505.527 kb on - strandat 505.527 kb on - strandat 505.649 kb on + strand, within EX28DRAFT_3207at 505.652 kb on - strand, within EX28DRAFT_3207at 505.757 kb on + strand, within EX28DRAFT_3207at 505.773 kb on - strand, within EX28DRAFT_3207at 505.982 kb on + strand, within EX28DRAFT_3207at 505.983 kb on - strand, within EX28DRAFT_3207at 505.983 kb on - strand, within EX28DRAFT_3207at 505.983 kb on - strand, within EX28DRAFT_3207at 505.983 kb on - strand, within EX28DRAFT_3207at 505.994 kb on + strand, within EX28DRAFT_3207at 505.995 kb on - strand, within EX28DRAFT_3207at 505.995 kb on - strand, within EX28DRAFT_3207at 505.995 kb on - strand, within EX28DRAFT_3207at 506.291 kb on + strand, within EX28DRAFT_3207at 506.329 kb on - strand, within EX28DRAFT_3207at 506.357 kb on + strandat 506.358 kb on - strandat 506.358 kb on - strandat 506.358 kb on - strandat 506.430 kb on - strandat 506.438 kb on - strandat 506.463 kb on + strandat 506.463 kb on + strandat 506.464 kb on - strandat 506.464 kb on - strandat 506.484 kb on + strandat 506.484 kb on + strandat 506.774 kb on + strand, within EX28DRAFT_3208at 506.811 kb on + strand, within EX28DRAFT_3208at 506.961 kb on + strand, within EX28DRAFT_3208at 506.961 kb on + strand, within EX28DRAFT_3208at 507.051 kb on - strand, within EX28DRAFT_3208at 507.051 kb on - strand, within EX28DRAFT_3208at 507.055 kb on - strand, within EX28DRAFT_3208at 507.138 kb on + strand, within EX28DRAFT_3208at 507.138 kb on + strand, within EX28DRAFT_3208at 507.138 kb on + strand, within EX28DRAFT_3208at 507.138 kb on + strand, within EX28DRAFT_3208at 507.138 kb on + strand, within EX28DRAFT_3208at 507.138 kb on + strand, within EX28DRAFT_3208at 507.138 kb on + strand, within EX28DRAFT_3208at 507.138 kb on + strand, within EX28DRAFT_3208at 507.139 kb on - strand, within EX28DRAFT_3208at 507.139 kb on - strand, within EX28DRAFT_3208at 507.139 kb on - strand, within EX28DRAFT_3208at 507.380 kb on + strandat 507.384 kb on - strandat 507.413 kb on + strandat 507.413 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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504,477 + EX28DRAFT_3205 0.51 -0.8
504,558 + EX28DRAFT_3205 0.67 -0.0
504,605 - EX28DRAFT_3205 0.76 -0.2
504,734 - +0.7
504,832 + EX28DRAFT_3206 0.22 +0.2
504,833 - EX28DRAFT_3206 0.22 -0.0
504,863 + EX28DRAFT_3206 0.28 +0.2
505,249 + +0.6
505,263 + +0.0
505,263 + -0.2
505,263 + -1.3
505,263 + -0.1
505,263 + +0.4
505,263 + +0.1
505,264 - -2.4
505,264 - +0.5
505,264 - -1.0
505,264 - -0.5
505,264 - -1.3
505,264 - -0.5
505,264 - -0.5
505,266 - -0.6
505,334 - +0.1
505,342 - +0.5
505,342 - -0.1
505,364 + -0.3
505,365 - +0.4
505,373 + -2.3
505,374 - +0.2
505,438 + -0.1
505,438 + +0.6
505,493 - +0.9
505,526 + -0.4
505,526 + -1.1
505,526 + -0.6
505,527 - -0.2
505,527 - +0.5
505,649 + EX28DRAFT_3207 0.20 +0.9
505,652 - EX28DRAFT_3207 0.20 +0.3
505,757 + EX28DRAFT_3207 0.30 +0.6
505,773 - EX28DRAFT_3207 0.32 -0.1
505,982 + EX28DRAFT_3207 0.53 -0.7
505,983 - EX28DRAFT_3207 0.53 +2.0
505,983 - EX28DRAFT_3207 0.53 +0.4
505,983 - EX28DRAFT_3207 0.53 +2.1
505,983 - EX28DRAFT_3207 0.53 -0.2
505,994 + EX28DRAFT_3207 0.54 +0.4
505,995 - EX28DRAFT_3207 0.54 +0.4
505,995 - EX28DRAFT_3207 0.54 +0.7
505,995 - EX28DRAFT_3207 0.54 +0.3
506,291 + EX28DRAFT_3207 0.84 -0.1
506,329 - EX28DRAFT_3207 0.88 -1.0
506,357 + +0.3
506,358 - +1.1
506,358 - -0.1
506,358 - -0.3
506,430 - -1.0
506,438 - -0.5
506,463 + -0.1
506,463 + +0.2
506,464 - +0.9
506,464 - -0.9
506,484 + -0.3
506,484 + -0.8
506,774 + EX28DRAFT_3208 0.36 +1.0
506,811 + EX28DRAFT_3208 0.40 +0.4
506,961 + EX28DRAFT_3208 0.57 -0.3
506,961 + EX28DRAFT_3208 0.57 +0.6
507,051 - EX28DRAFT_3208 0.68 +0.1
507,051 - EX28DRAFT_3208 0.68 -0.8
507,055 - EX28DRAFT_3208 0.68 +0.5
507,138 + EX28DRAFT_3208 0.77 -0.2
507,138 + EX28DRAFT_3208 0.77 -1.1
507,138 + EX28DRAFT_3208 0.77 -0.2
507,138 + EX28DRAFT_3208 0.77 +0.0
507,138 + EX28DRAFT_3208 0.77 +0.5
507,138 + EX28DRAFT_3208 0.77 +0.2
507,138 + EX28DRAFT_3208 0.77 +0.1
507,138 + EX28DRAFT_3208 0.77 -0.2
507,139 - EX28DRAFT_3208 0.78 +1.2
507,139 - EX28DRAFT_3208 0.78 +1.2
507,139 - EX28DRAFT_3208 0.78 -0.8
507,380 + -1.3
507,384 - +0.1
507,413 + +0.1
507,413 + -0.2

Or see this region's nucleotide sequence