Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3181 and EX28DRAFT_3182 are separated by 59 nucleotides EX28DRAFT_3182 and EX28DRAFT_3183 are separated by 21 nucleotides EX28DRAFT_3183 and EX28DRAFT_3184 are separated by 374 nucleotides
EX28DRAFT_3180: EX28DRAFT_3180 - hypothetical protein, at 481,831 to 482,346
_3180
EX28DRAFT_3181: EX28DRAFT_3181 - RNA, at 481,922 to 482,298
_3181
EX28DRAFT_3182: EX28DRAFT_3182 - 2-hydroxy-3-oxopropionate reductase, at 482,358 to 483,248
_3182
EX28DRAFT_3183: EX28DRAFT_3183 - 2-dehydro-3-deoxyglucarate aldolase, at 483,270 to 484,040
_3183
EX28DRAFT_3184: EX28DRAFT_3184 - galactarate dehydratase, at 484,415 to 485,986
_3184
Position (kb) 483
484
485 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 482.337 kb on + strand at 482.338 kb on - strand at 482.344 kb on + strand at 482.345 kb on - strand at 482.395 kb on + strand at 482.395 kb on + strand at 482.534 kb on + strand, within EX28DRAFT_3182 at 482.568 kb on - strand, within EX28DRAFT_3182 at 482.607 kb on - strand, within EX28DRAFT_3182 at 482.803 kb on + strand, within EX28DRAFT_3182 at 482.803 kb on + strand, within EX28DRAFT_3182 at 482.803 kb on + strand, within EX28DRAFT_3182 at 482.803 kb on + strand, within EX28DRAFT_3182 at 482.804 kb on - strand, within EX28DRAFT_3182 at 482.804 kb on - strand, within EX28DRAFT_3182 at 482.806 kb on + strand, within EX28DRAFT_3182 at 482.806 kb on + strand, within EX28DRAFT_3182 at 482.806 kb on + strand, within EX28DRAFT_3182 at 482.807 kb on - strand, within EX28DRAFT_3182 at 482.807 kb on - strand, within EX28DRAFT_3182 at 482.957 kb on + strand, within EX28DRAFT_3182 at 482.957 kb on + strand, within EX28DRAFT_3182 at 482.957 kb on + strand, within EX28DRAFT_3182 at 482.966 kb on + strand, within EX28DRAFT_3182 at 483.173 kb on - strand at 483.194 kb on + strand at 483.195 kb on - strand at 483.248 kb on + strand at 483.249 kb on - strand at 483.365 kb on - strand, within EX28DRAFT_3183 at 483.525 kb on - strand, within EX28DRAFT_3183 at 483.628 kb on + strand, within EX28DRAFT_3183 at 483.711 kb on + strand, within EX28DRAFT_3183 at 483.711 kb on + strand, within EX28DRAFT_3183 at 483.712 kb on - strand, within EX28DRAFT_3183 at 483.806 kb on + strand, within EX28DRAFT_3183 at 484.034 kb on + strand at 484.068 kb on + strand at 484.071 kb on - strand at 484.071 kb on - strand at 484.088 kb on + strand at 484.159 kb on - strand at 484.160 kb on + strand at 484.202 kb on - strand at 484.275 kb on - strand at 484.348 kb on - strand at 484.351 kb on + strand at 484.406 kb on + strand at 484.462 kb on - strand at 484.558 kb on + strand at 484.559 kb on - strand at 484.573 kb on + strand, within EX28DRAFT_3184 at 484.573 kb on + strand, within EX28DRAFT_3184 at 484.573 kb on + strand, within EX28DRAFT_3184 at 484.573 kb on + strand, within EX28DRAFT_3184 at 484.574 kb on - strand, within EX28DRAFT_3184 at 484.574 kb on - strand, within EX28DRAFT_3184 at 484.614 kb on + strand, within EX28DRAFT_3184 at 484.651 kb on + strand, within EX28DRAFT_3184 at 484.651 kb on + strand, within EX28DRAFT_3184 at 484.651 kb on + strand, within EX28DRAFT_3184 at 484.652 kb on - strand, within EX28DRAFT_3184 at 484.766 kb on + strand, within EX28DRAFT_3184 at 484.768 kb on + strand, within EX28DRAFT_3184 at 484.858 kb on - strand, within EX28DRAFT_3184 at 484.865 kb on + strand, within EX28DRAFT_3184 at 484.993 kb on + strand, within EX28DRAFT_3184 at 484.993 kb on + strand, within EX28DRAFT_3184
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 482,337 + -0.2 482,338 - -0.4 482,344 + -1.2 482,345 - -1.3 482,395 + -0.0 482,395 + +0.5 482,534 + EX28DRAFT_3182 0.20 -0.7 482,568 - EX28DRAFT_3182 0.24 -0.1 482,607 - EX28DRAFT_3182 0.28 +0.1 482,803 + EX28DRAFT_3182 0.50 +0.7 482,803 + EX28DRAFT_3182 0.50 +0.4 482,803 + EX28DRAFT_3182 0.50 -0.4 482,803 + EX28DRAFT_3182 0.50 +0.5 482,804 - EX28DRAFT_3182 0.50 +0.1 482,804 - EX28DRAFT_3182 0.50 +0.0 482,806 + EX28DRAFT_3182 0.50 +0.5 482,806 + EX28DRAFT_3182 0.50 -4.2 482,806 + EX28DRAFT_3182 0.50 -0.6 482,807 - EX28DRAFT_3182 0.50 -0.6 482,807 - EX28DRAFT_3182 0.50 -0.2 482,957 + EX28DRAFT_3182 0.67 +0.9 482,957 + EX28DRAFT_3182 0.67 +2.2 482,957 + EX28DRAFT_3182 0.67 -0.3 482,966 + EX28DRAFT_3182 0.68 -0.6 483,173 - +0.2 483,194 + +0.6 483,195 - -1.0 483,248 + -0.4 483,249 - +0.1 483,365 - EX28DRAFT_3183 0.12 -1.3 483,525 - EX28DRAFT_3183 0.33 +0.9 483,628 + EX28DRAFT_3183 0.46 +0.1 483,711 + EX28DRAFT_3183 0.57 -0.0 483,711 + EX28DRAFT_3183 0.57 +0.7 483,712 - EX28DRAFT_3183 0.57 +0.2 483,806 + EX28DRAFT_3183 0.70 +0.7 484,034 + +0.1 484,068 + -0.3 484,071 - +0.0 484,071 - -0.1 484,088 + -0.1 484,159 - -0.3 484,160 + -0.8 484,202 - +0.3 484,275 - +1.0 484,348 - -0.2 484,351 + +1.1 484,406 + +0.4 484,462 - -0.8 484,558 + -0.0 484,559 - -0.6 484,573 + EX28DRAFT_3184 0.10 -0.2 484,573 + EX28DRAFT_3184 0.10 -3.2 484,573 + EX28DRAFT_3184 0.10 -0.3 484,573 + EX28DRAFT_3184 0.10 +1.4 484,574 - EX28DRAFT_3184 0.10 +0.3 484,574 - EX28DRAFT_3184 0.10 +0.2 484,614 + EX28DRAFT_3184 0.13 -0.0 484,651 + EX28DRAFT_3184 0.15 +0.1 484,651 + EX28DRAFT_3184 0.15 +0.8 484,651 + EX28DRAFT_3184 0.15 -0.1 484,652 - EX28DRAFT_3184 0.15 -1.0 484,766 + EX28DRAFT_3184 0.22 -0.6 484,768 + EX28DRAFT_3184 0.22 +0.1 484,858 - EX28DRAFT_3184 0.28 +0.3 484,865 + EX28DRAFT_3184 0.29 -0.0 484,993 + EX28DRAFT_3184 0.37 +0.3 484,993 + EX28DRAFT_3184 0.37 -0.8
Or see this region's nucleotide sequence