Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3173

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3172 and EX28DRAFT_3173 are separated by 104 nucleotidesEX28DRAFT_3173 and EX28DRAFT_3174 are separated by 90 nucleotidesEX28DRAFT_3174 and EX28DRAFT_3175 are separated by 153 nucleotides EX28DRAFT_3172: EX28DRAFT_3172 - Transcriptional regulator, at 471,982 to 472,884 _3172 EX28DRAFT_3173: EX28DRAFT_3173 - Pirin-related protein, at 472,989 to 473,690 _3173 EX28DRAFT_3174: EX28DRAFT_3174 - P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein, at 473,781 to 474,191 _3174 EX28DRAFT_3175: EX28DRAFT_3175 - formate acetyltransferase 1, at 474,345 to 476,639 _3175 Position (kb) 472 473 474Strain fitness (log2 ratio) -2 -1 0 1 2at 471.991 kb on - strandat 471.991 kb on - strandat 471.991 kb on - strandat 471.992 kb on + strandat 471.993 kb on - strandat 471.993 kb on - strandat 471.993 kb on - strandat 472.072 kb on - strandat 472.072 kb on - strandat 472.092 kb on - strand, within EX28DRAFT_3172at 472.230 kb on + strand, within EX28DRAFT_3172at 472.296 kb on - strand, within EX28DRAFT_3172at 472.365 kb on - strand, within EX28DRAFT_3172at 472.383 kb on - strand, within EX28DRAFT_3172at 472.582 kb on + strand, within EX28DRAFT_3172at 472.583 kb on - strand, within EX28DRAFT_3172at 472.583 kb on - strand, within EX28DRAFT_3172at 472.583 kb on - strand, within EX28DRAFT_3172at 472.766 kb on + strand, within EX28DRAFT_3172at 472.766 kb on + strand, within EX28DRAFT_3172at 472.878 kb on + strandat 472.966 kb on + strandat 472.971 kb on + strandat 472.989 kb on - strandat 472.989 kb on - strandat 472.995 kb on - strandat 473.010 kb on - strandat 473.073 kb on + strand, within EX28DRAFT_3173at 473.073 kb on + strand, within EX28DRAFT_3173at 473.074 kb on - strand, within EX28DRAFT_3173at 473.074 kb on - strand, within EX28DRAFT_3173at 473.159 kb on + strand, within EX28DRAFT_3173at 473.160 kb on - strand, within EX28DRAFT_3173at 473.212 kb on - strand, within EX28DRAFT_3173at 473.212 kb on - strand, within EX28DRAFT_3173at 473.300 kb on + strand, within EX28DRAFT_3173at 473.402 kb on + strand, within EX28DRAFT_3173at 473.436 kb on - strand, within EX28DRAFT_3173at 473.441 kb on + strand, within EX28DRAFT_3173at 473.533 kb on - strand, within EX28DRAFT_3173at 473.536 kb on + strand, within EX28DRAFT_3173at 473.537 kb on - strand, within EX28DRAFT_3173at 473.537 kb on - strand, within EX28DRAFT_3173at 473.543 kb on + strand, within EX28DRAFT_3173at 473.558 kb on - strand, within EX28DRAFT_3173at 473.695 kb on + strandat 473.696 kb on - strandat 473.813 kb on + strandat 473.823 kb on - strand, within EX28DRAFT_3174at 473.861 kb on - strand, within EX28DRAFT_3174at 473.861 kb on - strand, within EX28DRAFT_3174at 473.863 kb on + strand, within EX28DRAFT_3174at 474.002 kb on + strand, within EX28DRAFT_3174at 474.003 kb on - strand, within EX28DRAFT_3174at 474.003 kb on - strand, within EX28DRAFT_3174at 474.003 kb on - strand, within EX28DRAFT_3174at 474.048 kb on - strand, within EX28DRAFT_3174at 474.194 kb on + strandat 474.195 kb on - strandat 474.195 kb on - strandat 474.195 kb on - strandat 474.203 kb on + strandat 474.203 kb on + strandat 474.203 kb on + strandat 474.203 kb on + strandat 474.204 kb on - strandat 474.204 kb on - strandat 474.204 kb on - strandat 474.204 kb on - strandat 474.204 kb on - strandat 474.204 kb on - strandat 474.231 kb on + strandat 474.255 kb on + strandat 474.256 kb on - strandat 474.256 kb on - strandat 474.256 kb on - strandat 474.256 kb on - strandat 474.256 kb on - strandat 474.256 kb on - strandat 474.256 kb on - strandat 474.266 kb on - strandat 474.266 kb on - strandat 474.269 kb on + strandat 474.270 kb on - strandat 474.270 kb on - strandat 474.270 kb on - strandat 474.270 kb on - strandat 474.270 kb on - strandat 474.271 kb on + strandat 474.273 kb on + strandat 474.351 kb on - strandat 474.632 kb on - strand, within EX28DRAFT_3175at 474.632 kb on - strand, within EX28DRAFT_3175at 474.652 kb on + strand, within EX28DRAFT_3175at 474.653 kb on - strand, within EX28DRAFT_3175

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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471,991 - +0.4
471,991 - -0.4
471,991 - -0.5
471,992 + -0.8
471,993 - -0.1
471,993 - -0.2
471,993 - -0.1
472,072 - -0.2
472,072 - -0.0
472,092 - EX28DRAFT_3172 0.12 +0.4
472,230 + EX28DRAFT_3172 0.27 +0.4
472,296 - EX28DRAFT_3172 0.35 -1.1
472,365 - EX28DRAFT_3172 0.42 -0.3
472,383 - EX28DRAFT_3172 0.44 +0.1
472,582 + EX28DRAFT_3172 0.66 -0.3
472,583 - EX28DRAFT_3172 0.67 -0.3
472,583 - EX28DRAFT_3172 0.67 -0.9
472,583 - EX28DRAFT_3172 0.67 -0.3
472,766 + EX28DRAFT_3172 0.87 -0.5
472,766 + EX28DRAFT_3172 0.87 +0.4
472,878 + -0.1
472,966 + +1.1
472,971 + +0.8
472,989 - -0.1
472,989 - +0.5
472,995 - +0.1
473,010 - -0.7
473,073 + EX28DRAFT_3173 0.12 +0.2
473,073 + EX28DRAFT_3173 0.12 -0.4
473,074 - EX28DRAFT_3173 0.12 +0.3
473,074 - EX28DRAFT_3173 0.12 -0.4
473,159 + EX28DRAFT_3173 0.24 -1.3
473,160 - EX28DRAFT_3173 0.24 -0.9
473,212 - EX28DRAFT_3173 0.32 -0.2
473,212 - EX28DRAFT_3173 0.32 -0.7
473,300 + EX28DRAFT_3173 0.44 -2.1
473,402 + EX28DRAFT_3173 0.59 +0.9
473,436 - EX28DRAFT_3173 0.64 -0.8
473,441 + EX28DRAFT_3173 0.64 +0.5
473,533 - EX28DRAFT_3173 0.77 +0.3
473,536 + EX28DRAFT_3173 0.78 +0.4
473,537 - EX28DRAFT_3173 0.78 -0.2
473,537 - EX28DRAFT_3173 0.78 -0.2
473,543 + EX28DRAFT_3173 0.79 -1.1
473,558 - EX28DRAFT_3173 0.81 -1.1
473,695 + -0.4
473,696 - +0.2
473,813 + -0.0
473,823 - EX28DRAFT_3174 0.10 +0.7
473,861 - EX28DRAFT_3174 0.19 +0.0
473,861 - EX28DRAFT_3174 0.19 +0.4
473,863 + EX28DRAFT_3174 0.20 -0.9
474,002 + EX28DRAFT_3174 0.54 -0.2
474,003 - EX28DRAFT_3174 0.54 +0.1
474,003 - EX28DRAFT_3174 0.54 +0.6
474,003 - EX28DRAFT_3174 0.54 -0.5
474,048 - EX28DRAFT_3174 0.65 +0.1
474,194 + -0.8
474,195 - +0.6
474,195 - +0.3
474,195 - +0.1
474,203 + -0.8
474,203 + +0.6
474,203 + -0.1
474,203 + +0.1
474,204 - +0.1
474,204 - +1.7
474,204 - +0.9
474,204 - +1.5
474,204 - +1.9
474,204 - +0.2
474,231 + +0.5
474,255 + -0.0
474,256 - +0.2
474,256 - -0.0
474,256 - -0.5
474,256 - -0.6
474,256 - +0.3
474,256 - +0.9
474,256 - +0.8
474,266 - +0.1
474,266 - +1.7
474,269 + -0.2
474,270 - +0.2
474,270 - +0.0
474,270 - +0.1
474,270 - +0.1
474,270 - +0.2
474,271 + +0.2
474,273 + +0.8
474,351 - +0.3
474,632 - EX28DRAFT_3175 0.13 +0.7
474,632 - EX28DRAFT_3175 0.13 +0.3
474,652 + EX28DRAFT_3175 0.13 +0.1
474,653 - EX28DRAFT_3175 0.13 -0.4

Or see this region's nucleotide sequence