Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3153 and EX28DRAFT_3154 are separated by 83 nucleotides EX28DRAFT_3154 and EX28DRAFT_3155 are separated by 70 nucleotides EX28DRAFT_3155 and EX28DRAFT_3156 are separated by 56 nucleotides EX28DRAFT_3156 and EX28DRAFT_3157 are separated by 80 nucleotides
EX28DRAFT_3153: EX28DRAFT_3153 - 16S RNA G1207 methylase RsmC, at 455,634 to 456,770
_3153
EX28DRAFT_3154: EX28DRAFT_3154 - Predicted metal-dependent hydrolase, at 456,854 to 457,357
_3154
EX28DRAFT_3155: EX28DRAFT_3155 - Predicted dehydrogenases and related proteins, at 457,428 to 458,426
_3155
EX28DRAFT_3156: EX28DRAFT_3156 - RNA, at 458,483 to 458,596
_3156
EX28DRAFT_3157: EX28DRAFT_3157 - integral membrane protein, TerC family, at 458,677 to 459,645
_3157
Position (kb) 457
458
459 Strain fitness (log2 ratio) -2
-1
0
1
2 at 456.569 kb on - strand, within EX28DRAFT_3153 at 456.670 kb on + strand at 456.670 kb on + strand at 456.671 kb on - strand at 456.760 kb on - strand at 456.760 kb on - strand at 456.787 kb on + strand at 456.822 kb on + strand at 456.823 kb on - strand at 456.833 kb on + strand at 456.865 kb on + strand at 456.866 kb on - strand at 456.866 kb on - strand at 456.866 kb on - strand at 456.866 kb on - strand at 456.870 kb on - strand at 456.870 kb on - strand at 456.870 kb on - strand at 456.895 kb on - strand at 457.002 kb on - strand, within EX28DRAFT_3154 at 457.003 kb on + strand, within EX28DRAFT_3154 at 457.004 kb on - strand, within EX28DRAFT_3154 at 457.061 kb on + strand, within EX28DRAFT_3154 at 457.260 kb on - strand, within EX28DRAFT_3154 at 457.260 kb on - strand, within EX28DRAFT_3154 at 457.385 kb on + strand at 457.385 kb on + strand at 457.386 kb on - strand at 457.386 kb on - strand at 457.386 kb on - strand at 457.386 kb on - strand at 457.386 kb on - strand at 457.416 kb on - strand at 457.420 kb on - strand at 457.427 kb on + strand at 457.427 kb on + strand at 457.432 kb on + strand at 457.505 kb on + strand at 457.505 kb on + strand at 457.506 kb on - strand at 457.506 kb on - strand at 457.521 kb on + strand at 457.522 kb on - strand at 457.629 kb on + strand, within EX28DRAFT_3155 at 457.629 kb on + strand, within EX28DRAFT_3155 at 457.630 kb on - strand, within EX28DRAFT_3155 at 457.630 kb on - strand, within EX28DRAFT_3155 at 457.631 kb on + strand, within EX28DRAFT_3155 at 457.931 kb on + strand, within EX28DRAFT_3155 at 457.955 kb on + strand, within EX28DRAFT_3155 at 457.956 kb on - strand, within EX28DRAFT_3155 at 457.956 kb on - strand, within EX28DRAFT_3155 at 457.958 kb on + strand, within EX28DRAFT_3155 at 457.959 kb on - strand, within EX28DRAFT_3155 at 458.252 kb on + strand, within EX28DRAFT_3155 at 458.253 kb on - strand, within EX28DRAFT_3155 at 458.256 kb on - strand, within EX28DRAFT_3155 at 458.261 kb on + strand, within EX28DRAFT_3155 at 458.261 kb on + strand, within EX28DRAFT_3155 at 458.261 kb on + strand, within EX28DRAFT_3155 at 458.261 kb on + strand, within EX28DRAFT_3155 at 458.261 kb on + strand, within EX28DRAFT_3155 at 458.262 kb on - strand, within EX28DRAFT_3155 at 458.268 kb on + strand, within EX28DRAFT_3155 at 458.268 kb on + strand, within EX28DRAFT_3155 at 458.477 kb on + strand at 458.478 kb on - strand at 458.485 kb on + strand at 458.502 kb on - strand, within EX28DRAFT_3156 at 458.527 kb on + strand, within EX28DRAFT_3156 at 458.527 kb on + strand, within EX28DRAFT_3156 at 458.575 kb on + strand, within EX28DRAFT_3156 at 458.575 kb on + strand, within EX28DRAFT_3156 at 458.576 kb on - strand, within EX28DRAFT_3156 at 458.604 kb on + strand at 458.604 kb on + strand at 458.604 kb on + strand at 458.604 kb on + strand at 458.605 kb on - strand at 458.605 kb on - strand at 458.605 kb on - strand at 458.610 kb on + strand at 458.611 kb on - strand at 458.658 kb on + strand at 458.658 kb on + strand at 458.659 kb on - strand at 458.673 kb on + strand at 458.673 kb on + strand at 458.676 kb on + strand at 458.860 kb on + strand, within EX28DRAFT_3157 at 458.860 kb on + strand, within EX28DRAFT_3157 at 459.026 kb on - strand, within EX28DRAFT_3157
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 456,569 - EX28DRAFT_3153 0.82 -0.9 456,670 + +0.3 456,670 + -0.3 456,671 - -0.2 456,760 - +0.5 456,760 - +0.5 456,787 + -0.9 456,822 + +0.6 456,823 - -0.1 456,833 + -2.4 456,865 + +0.5 456,866 - +0.5 456,866 - -0.0 456,866 - -1.1 456,866 - -0.3 456,870 - -0.2 456,870 - -0.8 456,870 - -0.6 456,895 - +0.4 457,002 - EX28DRAFT_3154 0.29 +0.3 457,003 + EX28DRAFT_3154 0.30 +0.1 457,004 - EX28DRAFT_3154 0.30 +0.6 457,061 + EX28DRAFT_3154 0.41 +0.9 457,260 - EX28DRAFT_3154 0.81 +0.2 457,260 - EX28DRAFT_3154 0.81 -0.1 457,385 + -0.2 457,385 + -0.0 457,386 - +0.4 457,386 - -2.5 457,386 - -0.0 457,386 - -0.1 457,386 - -0.6 457,416 - -0.2 457,420 - +0.7 457,427 + -0.5 457,427 + -0.3 457,432 + -0.0 457,505 + -0.4 457,505 + +0.0 457,506 - +0.8 457,506 - -0.4 457,521 + +1.2 457,522 - -0.2 457,629 + EX28DRAFT_3155 0.20 +0.8 457,629 + EX28DRAFT_3155 0.20 +0.7 457,630 - EX28DRAFT_3155 0.20 +0.6 457,630 - EX28DRAFT_3155 0.20 +0.5 457,631 + EX28DRAFT_3155 0.20 +0.1 457,931 + EX28DRAFT_3155 0.50 -0.1 457,955 + EX28DRAFT_3155 0.53 -0.2 457,956 - EX28DRAFT_3155 0.53 -0.7 457,956 - EX28DRAFT_3155 0.53 -0.0 457,958 + EX28DRAFT_3155 0.53 +1.3 457,959 - EX28DRAFT_3155 0.53 +0.2 458,252 + EX28DRAFT_3155 0.82 +2.1 458,253 - EX28DRAFT_3155 0.83 -0.7 458,256 - EX28DRAFT_3155 0.83 -0.5 458,261 + EX28DRAFT_3155 0.83 +0.4 458,261 + EX28DRAFT_3155 0.83 -1.8 458,261 + EX28DRAFT_3155 0.83 +0.2 458,261 + EX28DRAFT_3155 0.83 +0.6 458,261 + EX28DRAFT_3155 0.83 +0.2 458,262 - EX28DRAFT_3155 0.83 +0.0 458,268 + EX28DRAFT_3155 0.84 -0.8 458,268 + EX28DRAFT_3155 0.84 +0.1 458,477 + +0.1 458,478 - -0.2 458,485 + +0.4 458,502 - EX28DRAFT_3156 0.17 -1.4 458,527 + EX28DRAFT_3156 0.39 -0.3 458,527 + EX28DRAFT_3156 0.39 -0.0 458,575 + EX28DRAFT_3156 0.81 +0.3 458,575 + EX28DRAFT_3156 0.81 -0.7 458,576 - EX28DRAFT_3156 0.82 +0.9 458,604 + -0.2 458,604 + -0.6 458,604 + -0.0 458,604 + -0.9 458,605 - +0.0 458,605 - -1.1 458,605 - -0.2 458,610 + +0.1 458,611 - -0.2 458,658 + -0.4 458,658 + -1.3 458,659 - +0.2 458,673 + +1.3 458,673 + +0.0 458,676 + +0.2 458,860 + EX28DRAFT_3157 0.19 -0.2 458,860 + EX28DRAFT_3157 0.19 +0.7 459,026 - EX28DRAFT_3157 0.36 -0.6
Or see this region's nucleotide sequence