Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3084

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3082 and EX28DRAFT_3083 are separated by 226 nucleotidesEX28DRAFT_3083 and EX28DRAFT_3084 are separated by 60 nucleotidesEX28DRAFT_3084 and EX28DRAFT_3085 are separated by 10 nucleotidesEX28DRAFT_3085 and EX28DRAFT_3086 are separated by 105 nucleotides EX28DRAFT_3082: EX28DRAFT_3082 - Uncharacterized conserved protein, at 394,203 to 395,504 _3082 EX28DRAFT_3083: EX28DRAFT_3083 - SH3 domain protein, at 395,731 to 396,354 _3083 EX28DRAFT_3084: EX28DRAFT_3084 - tRNA nucleotidyltransferase/poly(A) polymerase, at 396,415 to 397,656 _3084 EX28DRAFT_3085: EX28DRAFT_3085 - undecaprenyl-diphosphatase UppP, at 397,667 to 398,488 _3085 EX28DRAFT_3086: EX28DRAFT_3086 - dihydroneopterin aldolase, at 398,594 to 398,962 _3086 Position (kb) 396 397 398Strain fitness (log2 ratio) -3 -2 -1 0 1at 395.432 kb on + strandat 395.485 kb on - strandat 395.574 kb on + strandat 395.575 kb on - strandat 395.575 kb on - strandat 395.578 kb on + strandat 395.578 kb on + strandat 395.579 kb on - strandat 395.579 kb on - strandat 395.579 kb on - strandat 395.579 kb on - strandat 395.581 kb on + strandat 395.582 kb on - strandat 395.582 kb on - strandat 395.582 kb on - strandat 395.625 kb on - strandat 395.632 kb on + strandat 395.699 kb on + strandat 395.699 kb on + strandat 395.700 kb on - strandat 395.711 kb on - strandat 395.723 kb on - strandat 395.729 kb on + strandat 395.730 kb on - strandat 395.740 kb on - strandat 395.760 kb on + strandat 395.761 kb on - strandat 395.765 kb on + strandat 395.766 kb on - strandat 395.840 kb on + strand, within EX28DRAFT_3083at 395.845 kb on - strand, within EX28DRAFT_3083at 395.845 kb on - strand, within EX28DRAFT_3083at 395.860 kb on - strand, within EX28DRAFT_3083at 396.197 kb on + strand, within EX28DRAFT_3083at 396.255 kb on + strand, within EX28DRAFT_3083at 396.256 kb on - strand, within EX28DRAFT_3083at 396.256 kb on - strand, within EX28DRAFT_3083at 396.256 kb on - strand, within EX28DRAFT_3083at 396.256 kb on - strand, within EX28DRAFT_3083at 396.259 kb on + strand, within EX28DRAFT_3083at 396.260 kb on - strand, within EX28DRAFT_3083at 396.352 kb on + strandat 396.352 kb on + strandat 396.353 kb on - strandat 396.375 kb on + strandat 396.375 kb on + strandat 396.375 kb on + strandat 396.375 kb on + strandat 396.376 kb on - strandat 396.376 kb on - strandat 396.376 kb on - strandat 396.379 kb on + strandat 396.380 kb on - strandat 396.380 kb on - strandat 397.683 kb on + strandat 397.683 kb on + strandat 397.683 kb on + strandat 397.735 kb on + strandat 397.736 kb on - strandat 397.842 kb on + strand, within EX28DRAFT_3085at 397.849 kb on + strand, within EX28DRAFT_3085at 397.850 kb on - strand, within EX28DRAFT_3085at 397.850 kb on - strand, within EX28DRAFT_3085at 397.852 kb on - strand, within EX28DRAFT_3085at 397.852 kb on - strand, within EX28DRAFT_3085at 398.014 kb on + strand, within EX28DRAFT_3085at 398.028 kb on + strand, within EX28DRAFT_3085at 398.029 kb on - strand, within EX28DRAFT_3085at 398.096 kb on + strand, within EX28DRAFT_3085at 398.097 kb on - strand, within EX28DRAFT_3085at 398.118 kb on + strand, within EX28DRAFT_3085at 398.119 kb on - strand, within EX28DRAFT_3085at 398.206 kb on + strand, within EX28DRAFT_3085at 398.207 kb on - strand, within EX28DRAFT_3085at 398.320 kb on + strand, within EX28DRAFT_3085at 398.398 kb on + strand, within EX28DRAFT_3085at 398.399 kb on - strand, within EX28DRAFT_3085at 398.454 kb on - strandat 398.490 kb on + strandat 398.491 kb on - strandat 398.491 kb on - strandat 398.491 kb on - strandat 398.491 kb on - strandat 398.546 kb on + strandat 398.546 kb on + strandat 398.546 kb on + strandat 398.547 kb on - strandat 398.547 kb on - strandat 398.566 kb on - strandat 398.570 kb on + strandat 398.596 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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395,432 + -3.7
395,485 - -2.3
395,574 + -0.3
395,575 - -0.3
395,575 - -2.4
395,578 + -0.9
395,578 + +0.2
395,579 - +0.0
395,579 - -0.2
395,579 - +0.2
395,579 - -0.3
395,581 + -1.1
395,582 - -0.1
395,582 - +0.2
395,582 - +1.3
395,625 - +0.5
395,632 + -0.5
395,699 + +0.4
395,699 + -1.4
395,700 - +0.0
395,711 - +0.3
395,723 - -0.2
395,729 + +0.2
395,730 - -2.7
395,740 - -0.1
395,760 + +0.5
395,761 - -0.1
395,765 + -0.4
395,766 - +0.2
395,840 + EX28DRAFT_3083 0.17 -0.3
395,845 - EX28DRAFT_3083 0.18 +0.3
395,845 - EX28DRAFT_3083 0.18 +0.4
395,860 - EX28DRAFT_3083 0.21 -1.4
396,197 + EX28DRAFT_3083 0.75 +0.1
396,255 + EX28DRAFT_3083 0.84 +0.1
396,256 - EX28DRAFT_3083 0.84 -0.9
396,256 - EX28DRAFT_3083 0.84 -0.3
396,256 - EX28DRAFT_3083 0.84 +0.5
396,256 - EX28DRAFT_3083 0.84 +0.5
396,259 + EX28DRAFT_3083 0.85 +0.1
396,260 - EX28DRAFT_3083 0.85 -1.3
396,352 + +1.2
396,352 + +0.1
396,353 - -0.4
396,375 + +1.3
396,375 + -0.1
396,375 + -0.3
396,375 + +0.0
396,376 - -3.0
396,376 - -1.4
396,376 - -1.1
396,379 + -0.3
396,380 - -0.7
396,380 - -0.3
397,683 + -0.3
397,683 + +0.0
397,683 + +0.1
397,735 + -0.1
397,736 - -1.3
397,842 + EX28DRAFT_3085 0.21 -1.2
397,849 + EX28DRAFT_3085 0.22 -0.5
397,850 - EX28DRAFT_3085 0.22 -0.7
397,850 - EX28DRAFT_3085 0.22 +0.3
397,852 - EX28DRAFT_3085 0.23 -1.1
397,852 - EX28DRAFT_3085 0.23 -0.8
398,014 + EX28DRAFT_3085 0.42 -0.2
398,028 + EX28DRAFT_3085 0.44 -3.1
398,029 - EX28DRAFT_3085 0.44 +0.9
398,096 + EX28DRAFT_3085 0.52 +0.5
398,097 - EX28DRAFT_3085 0.52 -0.4
398,118 + EX28DRAFT_3085 0.55 +0.3
398,119 - EX28DRAFT_3085 0.55 -1.2
398,206 + EX28DRAFT_3085 0.66 +0.3
398,207 - EX28DRAFT_3085 0.66 +0.4
398,320 + EX28DRAFT_3085 0.79 -1.0
398,398 + EX28DRAFT_3085 0.89 -0.3
398,399 - EX28DRAFT_3085 0.89 -0.2
398,454 - -0.4
398,490 + +0.6
398,491 - -0.0
398,491 - -0.1
398,491 - +0.5
398,491 - -0.3
398,546 + +0.4
398,546 + -2.9
398,546 + +0.9
398,547 - -0.4
398,547 - -2.0
398,566 - -0.0
398,570 + -0.4
398,596 - +0.5

Or see this region's nucleotide sequence