Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2974

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2973 and EX28DRAFT_2974 are separated by 341 nucleotidesEX28DRAFT_2974 and EX28DRAFT_2975 are separated by 224 nucleotides EX28DRAFT_2973: EX28DRAFT_2973 - erythrose-4-phosphate dehydrogenase, at 282,874 to 283,893 _2973 EX28DRAFT_2974: EX28DRAFT_2974 - transketolase, bacterial and yeast, at 284,235 to 286,226 _2974 EX28DRAFT_2975: EX28DRAFT_2975 - Zn-dependent protease with chaperone function, at 286,451 to 287,257 _2975 Position (kb) 284 285 286 287Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 283.313 kb on + strand, within EX28DRAFT_2973at 283.314 kb on - strand, within EX28DRAFT_2973at 283.746 kb on - strand, within EX28DRAFT_2973at 283.832 kb on - strandat 283.833 kb on - strandat 283.848 kb on + strandat 283.848 kb on + strandat 283.849 kb on - strandat 283.893 kb on + strandat 284.079 kb on - strandat 284.087 kb on + strandat 284.088 kb on - strandat 284.117 kb on + strandat 284.172 kb on + strandat 284.173 kb on - strandat 284.173 kb on - strandat 284.173 kb on - strandat 284.173 kb on - strandat 284.173 kb on - strandat 284.226 kb on + strandat 284.227 kb on - strandat 284.236 kb on + strandat 284.237 kb on - strandat 284.362 kb on + strandat 284.363 kb on - strandat 284.938 kb on + strand, within EX28DRAFT_2974at 284.966 kb on + strand, within EX28DRAFT_2974at 284.966 kb on + strand, within EX28DRAFT_2974at 285.000 kb on + strand, within EX28DRAFT_2974at 285.017 kb on - strand, within EX28DRAFT_2974at 285.030 kb on - strand, within EX28DRAFT_2974at 285.047 kb on + strand, within EX28DRAFT_2974at 285.331 kb on - strand, within EX28DRAFT_2974at 285.682 kb on + strand, within EX28DRAFT_2974at 285.792 kb on + strand, within EX28DRAFT_2974at 285.792 kb on + strand, within EX28DRAFT_2974at 285.793 kb on - strand, within EX28DRAFT_2974at 285.941 kb on + strand, within EX28DRAFT_2974at 286.010 kb on + strand, within EX28DRAFT_2974at 286.137 kb on - strandat 286.215 kb on - strandat 286.332 kb on - strandat 286.332 kb on - strandat 286.332 kb on - strandat 286.332 kb on - strandat 286.332 kb on - strandat 286.423 kb on - strandat 286.423 kb on - strandat 286.423 kb on - strandat 286.423 kb on - strandat 286.427 kb on - strandat 286.468 kb on + strandat 286.469 kb on - strandat 286.469 kb on - strandat 286.477 kb on + strandat 286.515 kb on + strandat 286.657 kb on + strand, within EX28DRAFT_2975at 286.658 kb on - strand, within EX28DRAFT_2975at 286.664 kb on - strand, within EX28DRAFT_2975at 286.699 kb on + strand, within EX28DRAFT_2975at 286.699 kb on + strand, within EX28DRAFT_2975at 286.700 kb on - strand, within EX28DRAFT_2975at 286.700 kb on - strand, within EX28DRAFT_2975at 286.704 kb on - strand, within EX28DRAFT_2975at 286.778 kb on + strand, within EX28DRAFT_2975at 286.779 kb on - strand, within EX28DRAFT_2975at 286.779 kb on - strand, within EX28DRAFT_2975at 286.779 kb on - strand, within EX28DRAFT_2975at 286.779 kb on - strand, within EX28DRAFT_2975at 286.779 kb on - strand, within EX28DRAFT_2975at 286.833 kb on - strand, within EX28DRAFT_2975at 287.038 kb on + strand, within EX28DRAFT_2975at 287.081 kb on + strand, within EX28DRAFT_2975at 287.081 kb on + strand, within EX28DRAFT_2975at 287.081 kb on + strand, within EX28DRAFT_2975at 287.088 kb on - strand, within EX28DRAFT_2975at 287.114 kb on - strand, within EX28DRAFT_2975at 287.221 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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283,313 + EX28DRAFT_2973 0.43 -0.1
283,314 - EX28DRAFT_2973 0.43 -0.8
283,746 - EX28DRAFT_2973 0.85 -0.7
283,832 - +0.7
283,833 - +0.1
283,848 + +0.3
283,848 + +1.5
283,849 - -1.3
283,893 + -0.2
284,079 - -0.5
284,087 + -0.1
284,088 - -0.8
284,117 + -0.1
284,172 + +0.3
284,173 - +0.3
284,173 - -1.3
284,173 - -0.0
284,173 - +0.0
284,173 - -0.6
284,226 + -1.6
284,227 - +0.8
284,236 + -0.1
284,237 - -0.3
284,362 + -0.2
284,363 - +2.5
284,938 + EX28DRAFT_2974 0.35 -3.3
284,966 + EX28DRAFT_2974 0.37 -1.1
284,966 + EX28DRAFT_2974 0.37 +0.8
285,000 + EX28DRAFT_2974 0.38 -0.4
285,017 - EX28DRAFT_2974 0.39 -2.4
285,030 - EX28DRAFT_2974 0.40 -2.6
285,047 + EX28DRAFT_2974 0.41 -3.5
285,331 - EX28DRAFT_2974 0.55 -3.1
285,682 + EX28DRAFT_2974 0.73 -3.4
285,792 + EX28DRAFT_2974 0.78 -1.8
285,792 + EX28DRAFT_2974 0.78 -1.7
285,793 - EX28DRAFT_2974 0.78 -1.4
285,941 + EX28DRAFT_2974 0.86 -0.9
286,010 + EX28DRAFT_2974 0.89 -2.0
286,137 - +0.4
286,215 - +0.6
286,332 - +0.6
286,332 - -1.1
286,332 - +0.4
286,332 - +0.6
286,332 - -0.1
286,423 - +0.5
286,423 - +1.3
286,423 - -0.0
286,423 - +0.4
286,427 - +0.3
286,468 + -0.2
286,469 - -0.9
286,469 - +1.5
286,477 + +0.4
286,515 + -0.4
286,657 + EX28DRAFT_2975 0.26 +1.3
286,658 - EX28DRAFT_2975 0.26 +0.4
286,664 - EX28DRAFT_2975 0.26 -0.6
286,699 + EX28DRAFT_2975 0.31 +0.3
286,699 + EX28DRAFT_2975 0.31 -0.3
286,700 - EX28DRAFT_2975 0.31 +0.0
286,700 - EX28DRAFT_2975 0.31 -0.9
286,704 - EX28DRAFT_2975 0.31 -0.2
286,778 + EX28DRAFT_2975 0.41 +0.3
286,779 - EX28DRAFT_2975 0.41 +0.1
286,779 - EX28DRAFT_2975 0.41 +0.8
286,779 - EX28DRAFT_2975 0.41 -0.4
286,779 - EX28DRAFT_2975 0.41 +0.3
286,779 - EX28DRAFT_2975 0.41 +1.9
286,833 - EX28DRAFT_2975 0.47 -0.3
287,038 + EX28DRAFT_2975 0.73 -1.2
287,081 + EX28DRAFT_2975 0.78 +0.2
287,081 + EX28DRAFT_2975 0.78 +0.3
287,081 + EX28DRAFT_2975 0.78 -0.4
287,088 - EX28DRAFT_2975 0.79 +1.0
287,114 - EX28DRAFT_2975 0.82 +0.9
287,221 + -0.1

Or see this region's nucleotide sequence