Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2936 and EX28DRAFT_2937 are separated by 22 nucleotides EX28DRAFT_2937 and EX28DRAFT_2938 are separated by 554 nucleotides EX28DRAFT_2938 and EX28DRAFT_2939 are separated by 80 nucleotides EX28DRAFT_2939 and EX28DRAFT_2940 are separated by 163 nucleotides
EX28DRAFT_2936: EX28DRAFT_2936 - Uracil DNA glycosylase superfamily, at 247,744 to 248,346
_2936
EX28DRAFT_2937: EX28DRAFT_2937 - hypothetical protein, at 248,369 to 248,614
_2937
EX28DRAFT_2938: EX28DRAFT_2938 - tRNA, at 249,169 to 249,242
_2938
EX28DRAFT_2939: EX28DRAFT_2939 - Membrane proteins related to metalloendopeptidases, at 249,323 to 250,066
_2939
EX28DRAFT_2940: EX28DRAFT_2940 - isopentenyl-diphosphate delta-isomerase (EC 5.3.3.2), at 250,230 to 250,772
_2940
Position (kb) 249
250 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 248.233 kb on + strand, within EX28DRAFT_2936 at 248.233 kb on + strand, within EX28DRAFT_2936 at 248.413 kb on - strand, within EX28DRAFT_2937 at 248.414 kb on + strand, within EX28DRAFT_2937 at 248.414 kb on + strand, within EX28DRAFT_2937 at 248.415 kb on - strand, within EX28DRAFT_2937 at 248.417 kb on - strand, within EX28DRAFT_2937 at 248.417 kb on - strand, within EX28DRAFT_2937 at 248.423 kb on + strand, within EX28DRAFT_2937 at 248.424 kb on - strand, within EX28DRAFT_2937 at 248.424 kb on - strand, within EX28DRAFT_2937 at 248.509 kb on - strand, within EX28DRAFT_2937 at 248.512 kb on + strand, within EX28DRAFT_2937 at 248.513 kb on - strand, within EX28DRAFT_2937 at 248.523 kb on + strand, within EX28DRAFT_2937 at 248.590 kb on + strand at 248.590 kb on + strand at 248.627 kb on + strand at 248.631 kb on + strand at 248.683 kb on - strand at 248.701 kb on + strand at 248.710 kb on + strand at 248.711 kb on - strand at 248.844 kb on - strand at 248.864 kb on + strand at 248.865 kb on - strand at 248.865 kb on - strand at 248.931 kb on + strand at 248.971 kb on - strand at 249.081 kb on + strand at 249.093 kb on + strand at 249.098 kb on + strand at 249.099 kb on - strand at 249.223 kb on + strand, within EX28DRAFT_2938 at 249.264 kb on + strand at 249.264 kb on + strand at 249.264 kb on + strand at 249.283 kb on + strand at 249.283 kb on + strand at 249.284 kb on - strand at 249.284 kb on - strand at 249.388 kb on - strand at 249.505 kb on - strand, within EX28DRAFT_2939 at 249.532 kb on + strand, within EX28DRAFT_2939 at 249.532 kb on + strand, within EX28DRAFT_2939 at 249.532 kb on + strand, within EX28DRAFT_2939 at 249.533 kb on - strand, within EX28DRAFT_2939 at 249.533 kb on - strand, within EX28DRAFT_2939 at 249.576 kb on + strand, within EX28DRAFT_2939 at 249.577 kb on - strand, within EX28DRAFT_2939 at 249.603 kb on + strand, within EX28DRAFT_2939 at 249.846 kb on + strand, within EX28DRAFT_2939 at 249.846 kb on + strand, within EX28DRAFT_2939 at 249.847 kb on - strand, within EX28DRAFT_2939 at 249.847 kb on - strand, within EX28DRAFT_2939 at 249.957 kb on + strand, within EX28DRAFT_2939 at 249.958 kb on - strand, within EX28DRAFT_2939 at 249.958 kb on - strand, within EX28DRAFT_2939 at 250.004 kb on + strand at 250.098 kb on + strand at 250.098 kb on + strand at 250.099 kb on - strand at 250.119 kb on + strand at 250.164 kb on - strand at 250.174 kb on + strand at 250.175 kb on - strand at 250.175 kb on - strand at 250.176 kb on + strand at 250.176 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 248,233 + EX28DRAFT_2936 0.81 -0.3 248,233 + EX28DRAFT_2936 0.81 -0.9 248,413 - EX28DRAFT_2937 0.18 +0.8 248,414 + EX28DRAFT_2937 0.18 -1.0 248,414 + EX28DRAFT_2937 0.18 +0.5 248,415 - EX28DRAFT_2937 0.19 -0.8 248,417 - EX28DRAFT_2937 0.20 -0.9 248,417 - EX28DRAFT_2937 0.20 +0.1 248,423 + EX28DRAFT_2937 0.22 -0.6 248,424 - EX28DRAFT_2937 0.22 -0.1 248,424 - EX28DRAFT_2937 0.22 +0.2 248,509 - EX28DRAFT_2937 0.57 -0.1 248,512 + EX28DRAFT_2937 0.58 +0.1 248,513 - EX28DRAFT_2937 0.59 -0.1 248,523 + EX28DRAFT_2937 0.63 -0.9 248,590 + +0.2 248,590 + +0.3 248,627 + +0.8 248,631 + -0.0 248,683 - +0.2 248,701 + -0.4 248,710 + +0.1 248,711 - -0.4 248,844 - -0.1 248,864 + +0.0 248,865 - +0.3 248,865 - -3.1 248,931 + -0.1 248,971 - +2.1 249,081 + -0.4 249,093 + +0.5 249,098 + -1.9 249,099 - -0.5 249,223 + EX28DRAFT_2938 0.73 -2.3 249,264 + +0.2 249,264 + +1.3 249,264 + +0.9 249,283 + -0.3 249,283 + +0.1 249,284 - +0.2 249,284 - -0.2 249,388 - -0.2 249,505 - EX28DRAFT_2939 0.24 +0.0 249,532 + EX28DRAFT_2939 0.28 -2.4 249,532 + EX28DRAFT_2939 0.28 +0.3 249,532 + EX28DRAFT_2939 0.28 -0.2 249,533 - EX28DRAFT_2939 0.28 +0.1 249,533 - EX28DRAFT_2939 0.28 +0.0 249,576 + EX28DRAFT_2939 0.34 +0.9 249,577 - EX28DRAFT_2939 0.34 -0.2 249,603 + EX28DRAFT_2939 0.38 +0.3 249,846 + EX28DRAFT_2939 0.70 -0.3 249,846 + EX28DRAFT_2939 0.70 +0.4 249,847 - EX28DRAFT_2939 0.70 -0.2 249,847 - EX28DRAFT_2939 0.70 +0.7 249,957 + EX28DRAFT_2939 0.85 -0.3 249,958 - EX28DRAFT_2939 0.85 +0.2 249,958 - EX28DRAFT_2939 0.85 +0.2 250,004 + +0.5 250,098 + +0.5 250,098 + +0.2 250,099 - -0.6 250,119 + -0.5 250,164 - +0.5 250,174 + +0.4 250,175 - +0.5 250,175 - -1.1 250,176 + +0.2 250,176 + -0.0
Or see this region's nucleotide sequence