Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2916

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2915 and EX28DRAFT_2916 overlap by 31 nucleotidesEX28DRAFT_2916 and EX28DRAFT_2917 are separated by 121 nucleotides EX28DRAFT_2915: EX28DRAFT_2915 - Transcriptional regulators, at 225,394 to 226,431 _2915 EX28DRAFT_2916: EX28DRAFT_2916 - diaminopimelate decarboxylase, at 226,401 to 227,663 _2916 EX28DRAFT_2917: EX28DRAFT_2917 - Transcriptional regulator, at 227,785 to 228,711 _2917 Position (kb) 226 227 228Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 225.486 kb on + strandat 225.610 kb on + strand, within EX28DRAFT_2915at 225.611 kb on - strand, within EX28DRAFT_2915at 225.758 kb on - strand, within EX28DRAFT_2915at 225.767 kb on - strand, within EX28DRAFT_2915at 225.904 kb on + strand, within EX28DRAFT_2915at 225.905 kb on - strand, within EX28DRAFT_2915at 225.940 kb on - strand, within EX28DRAFT_2915at 225.993 kb on + strand, within EX28DRAFT_2915at 226.069 kb on + strand, within EX28DRAFT_2915at 226.076 kb on + strand, within EX28DRAFT_2915at 226.076 kb on + strand, within EX28DRAFT_2915at 226.077 kb on - strand, within EX28DRAFT_2915at 226.195 kb on - strand, within EX28DRAFT_2915at 226.261 kb on + strand, within EX28DRAFT_2915at 226.278 kb on + strand, within EX28DRAFT_2915at 226.279 kb on - strand, within EX28DRAFT_2915at 226.279 kb on - strand, within EX28DRAFT_2915at 226.279 kb on - strand, within EX28DRAFT_2915at 226.394 kb on - strandat 226.508 kb on - strandat 226.508 kb on - strandat 226.512 kb on - strandat 226.558 kb on + strand, within EX28DRAFT_2916at 226.713 kb on - strand, within EX28DRAFT_2916at 226.723 kb on + strand, within EX28DRAFT_2916at 226.732 kb on + strand, within EX28DRAFT_2916at 227.072 kb on - strand, within EX28DRAFT_2916at 227.096 kb on + strand, within EX28DRAFT_2916at 227.131 kb on - strand, within EX28DRAFT_2916at 227.153 kb on + strand, within EX28DRAFT_2916at 227.154 kb on - strand, within EX28DRAFT_2916at 227.154 kb on - strand, within EX28DRAFT_2916at 227.288 kb on + strand, within EX28DRAFT_2916at 227.289 kb on - strand, within EX28DRAFT_2916at 227.292 kb on + strand, within EX28DRAFT_2916at 227.293 kb on - strand, within EX28DRAFT_2916at 227.484 kb on - strand, within EX28DRAFT_2916at 227.678 kb on - strandat 227.764 kb on + strandat 227.871 kb on + strandat 227.871 kb on + strandat 227.871 kb on + strandat 228.365 kb on - strand, within EX28DRAFT_2917at 228.391 kb on + strand, within EX28DRAFT_2917at 228.412 kb on + strand, within EX28DRAFT_2917at 228.413 kb on + strand, within EX28DRAFT_2917at 228.568 kb on - strand, within EX28DRAFT_2917

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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225,486 + -0.4
225,610 + EX28DRAFT_2915 0.21 -0.7
225,611 - EX28DRAFT_2915 0.21 -0.9
225,758 - EX28DRAFT_2915 0.35 -0.3
225,767 - EX28DRAFT_2915 0.36 +0.5
225,904 + EX28DRAFT_2915 0.49 -0.5
225,905 - EX28DRAFT_2915 0.49 +0.2
225,940 - EX28DRAFT_2915 0.53 -0.6
225,993 + EX28DRAFT_2915 0.58 +0.4
226,069 + EX28DRAFT_2915 0.65 +0.1
226,076 + EX28DRAFT_2915 0.66 -0.1
226,076 + EX28DRAFT_2915 0.66 +0.1
226,077 - EX28DRAFT_2915 0.66 +0.7
226,195 - EX28DRAFT_2915 0.77 -0.1
226,261 + EX28DRAFT_2915 0.84 +0.1
226,278 + EX28DRAFT_2915 0.85 -0.2
226,279 - EX28DRAFT_2915 0.85 +0.9
226,279 - EX28DRAFT_2915 0.85 +0.1
226,279 - EX28DRAFT_2915 0.85 -0.3
226,394 - +0.4
226,508 - -1.5
226,508 - -1.2
226,512 - +2.1
226,558 + EX28DRAFT_2916 0.12 -3.1
226,713 - EX28DRAFT_2916 0.25 -4.6
226,723 + EX28DRAFT_2916 0.25 -2.8
226,732 + EX28DRAFT_2916 0.26 -1.6
227,072 - EX28DRAFT_2916 0.53 -3.9
227,096 + EX28DRAFT_2916 0.55 -4.0
227,131 - EX28DRAFT_2916 0.58 -2.2
227,153 + EX28DRAFT_2916 0.60 -0.6
227,154 - EX28DRAFT_2916 0.60 -1.1
227,154 - EX28DRAFT_2916 0.60 -2.7
227,288 + EX28DRAFT_2916 0.70 -3.0
227,289 - EX28DRAFT_2916 0.70 -4.2
227,292 + EX28DRAFT_2916 0.71 -2.5
227,293 - EX28DRAFT_2916 0.71 -3.9
227,484 - EX28DRAFT_2916 0.86 -3.3
227,678 - -0.1
227,764 + -0.3
227,871 + -3.4
227,871 + -3.8
227,871 + -2.0
228,365 - EX28DRAFT_2917 0.63 -2.1
228,391 + EX28DRAFT_2917 0.65 -4.1
228,412 + EX28DRAFT_2917 0.68 -0.9
228,413 + EX28DRAFT_2917 0.68 -2.0
228,568 - EX28DRAFT_2917 0.84 -2.3

Or see this region's nucleotide sequence