Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2838 and EX28DRAFT_2839 are separated by 116 nucleotides EX28DRAFT_2839 and EX28DRAFT_2840 overlap by 7 nucleotides EX28DRAFT_2840 and EX28DRAFT_2841 overlap by 20 nucleotides
EX28DRAFT_2838: EX28DRAFT_2838 - Membrane proteins related to metalloendopeptidases, at 140,819 to 141,943
_2838
EX28DRAFT_2839: EX28DRAFT_2839 - protein-L-isoaspartate(D-aspartate) O-methyltransferase, at 142,060 to 142,686
_2839
EX28DRAFT_2840: EX28DRAFT_2840 - 3'-nucleotidase (EC 3.1.3.6)/5'-nucleotidase (EC 3.1.3.5)/exopolyphosphatase (EC 3.6.1.11), at 142,680 to 143,441
_2840
EX28DRAFT_2841: EX28DRAFT_2841 - tRNA pseudouridine synthase, TruD family, at 143,422 to 144,471
_2841
Position (kb) 142
143
144 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 141.856 kb on + strand at 141.857 kb on - strand at 141.857 kb on - strand at 141.866 kb on - strand at 141.945 kb on + strand at 141.968 kb on - strand at 141.986 kb on - strand at 142.020 kb on - strand at 142.038 kb on + strand at 142.039 kb on - strand at 142.120 kb on - strand at 142.317 kb on + strand, within EX28DRAFT_2839 at 142.360 kb on + strand, within EX28DRAFT_2839 at 142.361 kb on - strand, within EX28DRAFT_2839 at 142.387 kb on + strand, within EX28DRAFT_2839 at 142.387 kb on + strand, within EX28DRAFT_2839 at 142.388 kb on - strand, within EX28DRAFT_2839 at 142.388 kb on - strand, within EX28DRAFT_2839 at 142.388 kb on - strand, within EX28DRAFT_2839 at 142.502 kb on + strand, within EX28DRAFT_2839 at 142.502 kb on + strand, within EX28DRAFT_2839 at 142.502 kb on + strand, within EX28DRAFT_2839 at 142.503 kb on - strand, within EX28DRAFT_2839 at 142.503 kb on - strand, within EX28DRAFT_2839 at 142.503 kb on - strand, within EX28DRAFT_2839 at 142.503 kb on - strand, within EX28DRAFT_2839 at 142.503 kb on - strand, within EX28DRAFT_2839 at 142.544 kb on - strand, within EX28DRAFT_2839 at 142.580 kb on - strand, within EX28DRAFT_2839 at 142.740 kb on - strand at 142.742 kb on - strand at 142.781 kb on - strand, within EX28DRAFT_2840 at 142.830 kb on - strand, within EX28DRAFT_2840 at 143.134 kb on + strand, within EX28DRAFT_2840 at 143.135 kb on - strand, within EX28DRAFT_2840 at 143.135 kb on - strand, within EX28DRAFT_2840 at 143.316 kb on - strand, within EX28DRAFT_2840 at 143.491 kb on - strand at 143.549 kb on - strand, within EX28DRAFT_2841 at 143.549 kb on - strand, within EX28DRAFT_2841 at 143.791 kb on + strand, within EX28DRAFT_2841 at 143.997 kb on - strand, within EX28DRAFT_2841 at 144.184 kb on - strand, within EX28DRAFT_2841 at 144.232 kb on - strand, within EX28DRAFT_2841 at 144.330 kb on + strand, within EX28DRAFT_2841 at 144.342 kb on + strand, within EX28DRAFT_2841 at 144.436 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 141,856 + +0.1 141,857 - +0.3 141,857 - -0.3 141,866 - -0.2 141,945 + +0.5 141,968 - -0.3 141,986 - +0.2 142,020 - -0.9 142,038 + -0.4 142,039 - -0.9 142,120 - -3.9 142,317 + EX28DRAFT_2839 0.41 -1.4 142,360 + EX28DRAFT_2839 0.48 -0.5 142,361 - EX28DRAFT_2839 0.48 -0.0 142,387 + EX28DRAFT_2839 0.52 -0.0 142,387 + EX28DRAFT_2839 0.52 -0.6 142,388 - EX28DRAFT_2839 0.52 -0.8 142,388 - EX28DRAFT_2839 0.52 -2.1 142,388 - EX28DRAFT_2839 0.52 -0.2 142,502 + EX28DRAFT_2839 0.70 -1.2 142,502 + EX28DRAFT_2839 0.70 +0.1 142,502 + EX28DRAFT_2839 0.70 -1.2 142,503 - EX28DRAFT_2839 0.71 -0.4 142,503 - EX28DRAFT_2839 0.71 -0.5 142,503 - EX28DRAFT_2839 0.71 -0.6 142,503 - EX28DRAFT_2839 0.71 -0.2 142,503 - EX28DRAFT_2839 0.71 -0.9 142,544 - EX28DRAFT_2839 0.77 -1.2 142,580 - EX28DRAFT_2839 0.83 -1.9 142,740 - -1.0 142,742 - -2.4 142,781 - EX28DRAFT_2840 0.13 -0.3 142,830 - EX28DRAFT_2840 0.20 -0.4 143,134 + EX28DRAFT_2840 0.60 +0.9 143,135 - EX28DRAFT_2840 0.60 -0.2 143,135 - EX28DRAFT_2840 0.60 -2.8 143,316 - EX28DRAFT_2840 0.83 -0.9 143,491 - -0.1 143,549 - EX28DRAFT_2841 0.12 +1.3 143,549 - EX28DRAFT_2841 0.12 +0.6 143,791 + EX28DRAFT_2841 0.35 -0.5 143,997 - EX28DRAFT_2841 0.55 -0.3 144,184 - EX28DRAFT_2841 0.73 +0.7 144,232 - EX28DRAFT_2841 0.77 +0.8 144,330 + EX28DRAFT_2841 0.86 -0.3 144,342 + EX28DRAFT_2841 0.88 -0.6 144,436 - -1.8
Or see this region's nucleotide sequence