Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2812 and EX28DRAFT_2813 are separated by 15 nucleotides EX28DRAFT_2813 and EX28DRAFT_2814 are separated by 1 nucleotides EX28DRAFT_2814 and EX28DRAFT_2815 overlap by 4 nucleotides EX28DRAFT_2815 and EX28DRAFT_2816 are separated by 69 nucleotides
EX28DRAFT_2812: EX28DRAFT_2812 - Ni,Fe-hydrogenase III large subunit, at 114,997 to 116,706
_2812
EX28DRAFT_2813: EX28DRAFT_2813 - Formate hydrogenlyase subunit 4, at 116,722 to 117,645
_2813
EX28DRAFT_2814: EX28DRAFT_2814 - Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit, at 117,647 to 119,461
_2814
EX28DRAFT_2815: EX28DRAFT_2815 - Fe-S-cluster-containing hydrogenase components 2, at 119,458 to 120,066
_2815
EX28DRAFT_2816: EX28DRAFT_2816 - Transcriptional repressor of hyc and hyp operons, at 120,136 to 120,600
_2816
Position (kb) 117
118
119
120 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 116.678 kb on + strand at 116.706 kb on + strand at 116.706 kb on + strand at 116.707 kb on - strand at 116.707 kb on - strand at 116.710 kb on + strand at 116.710 kb on + strand at 116.710 kb on + strand at 116.711 kb on - strand at 116.711 kb on - strand at 116.711 kb on - strand at 116.720 kb on - strand at 116.749 kb on + strand at 117.341 kb on + strand, within EX28DRAFT_2813 at 117.342 kb on - strand, within EX28DRAFT_2813 at 117.345 kb on + strand, within EX28DRAFT_2813 at 117.345 kb on + strand, within EX28DRAFT_2813 at 117.346 kb on - strand, within EX28DRAFT_2813 at 117.988 kb on + strand, within EX28DRAFT_2814 at 118.291 kb on - strand, within EX28DRAFT_2814 at 118.291 kb on - strand, within EX28DRAFT_2814 at 118.469 kb on - strand, within EX28DRAFT_2814 at 119.192 kb on - strand, within EX28DRAFT_2814 at 120.085 kb on + strand at 120.086 kb on - strand at 120.212 kb on + strand, within EX28DRAFT_2816 at 120.224 kb on + strand, within EX28DRAFT_2816 at 120.225 kb on - strand, within EX28DRAFT_2816 at 120.249 kb on - strand, within EX28DRAFT_2816 at 120.330 kb on + strand, within EX28DRAFT_2816 at 120.330 kb on + strand, within EX28DRAFT_2816
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 116,678 + +0.4 116,706 + -0.6 116,706 + -0.1 116,707 - +1.1 116,707 - +0.6 116,710 + -0.1 116,710 + -0.4 116,710 + +0.0 116,711 - -0.3 116,711 - +0.2 116,711 - -0.2 116,720 - +0.1 116,749 + -0.2 117,341 + EX28DRAFT_2813 0.67 -1.1 117,342 - EX28DRAFT_2813 0.67 +0.6 117,345 + EX28DRAFT_2813 0.67 +0.0 117,345 + EX28DRAFT_2813 0.67 -2.1 117,346 - EX28DRAFT_2813 0.68 -0.1 117,988 + EX28DRAFT_2814 0.19 +0.5 118,291 - EX28DRAFT_2814 0.35 +1.1 118,291 - EX28DRAFT_2814 0.35 +0.4 118,469 - EX28DRAFT_2814 0.45 -0.1 119,192 - EX28DRAFT_2814 0.85 +0.5 120,085 + -2.9 120,086 - +0.2 120,212 + EX28DRAFT_2816 0.16 -0.2 120,224 + EX28DRAFT_2816 0.19 -1.2 120,225 - EX28DRAFT_2816 0.19 +0.3 120,249 - EX28DRAFT_2816 0.24 +0.1 120,330 + EX28DRAFT_2816 0.42 -0.7 120,330 + EX28DRAFT_2816 0.42 -0.0
Or see this region's nucleotide sequence