Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2803 and EX28DRAFT_2804 are separated by 5 nucleotides EX28DRAFT_2804 and EX28DRAFT_2805 are separated by 134 nucleotides
EX28DRAFT_2803: EX28DRAFT_2803 - [NiFe] hydrogenase maturation protein HypF, at 105,712 to 107,928
_2803
EX28DRAFT_2804: EX28DRAFT_2804 - Fe-S-cluster-containing hydrogenase components 2, at 107,934 to 108,479
_2804
EX28DRAFT_2805: EX28DRAFT_2805 - Transcriptional regulators, at 108,614 to 109,627
_2805
Position (kb)
107
108
109 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 107.040 kb on + strand, within EX28DRAFT_2803 at 107.040 kb on + strand, within EX28DRAFT_2803 at 107.040 kb on + strand, within EX28DRAFT_2803 at 107.041 kb on - strand, within EX28DRAFT_2803 at 107.041 kb on - strand, within EX28DRAFT_2803 at 107.673 kb on + strand, within EX28DRAFT_2803 at 107.673 kb on + strand, within EX28DRAFT_2803 at 107.674 kb on - strand, within EX28DRAFT_2803 at 107.911 kb on + strand at 107.912 kb on - strand at 107.928 kb on + strand at 107.928 kb on + strand at 108.117 kb on + strand, within EX28DRAFT_2804 at 108.117 kb on + strand, within EX28DRAFT_2804 at 108.118 kb on - strand, within EX28DRAFT_2804 at 108.145 kb on - strand, within EX28DRAFT_2804 at 108.145 kb on - strand, within EX28DRAFT_2804 at 108.147 kb on + strand, within EX28DRAFT_2804 at 108.229 kb on - strand, within EX28DRAFT_2804 at 108.229 kb on - strand, within EX28DRAFT_2804 at 108.229 kb on - strand, within EX28DRAFT_2804 at 108.254 kb on + strand, within EX28DRAFT_2804 at 108.320 kb on + strand, within EX28DRAFT_2804 at 108.327 kb on - strand, within EX28DRAFT_2804 at 108.432 kb on - strand at 108.449 kb on + strand at 108.450 kb on - strand at 108.467 kb on + strand at 108.468 kb on - strand at 108.468 kb on - strand at 108.495 kb on + strand at 108.496 kb on - strand at 108.502 kb on - strand at 108.591 kb on + strand at 108.591 kb on + strand at 108.591 kb on + strand at 108.592 kb on - strand at 108.682 kb on + strand at 108.682 kb on + strand at 108.682 kb on + strand at 108.682 kb on + strand at 108.752 kb on - strand, within EX28DRAFT_2805 at 108.780 kb on + strand, within EX28DRAFT_2805 at 108.781 kb on - strand, within EX28DRAFT_2805 at 109.075 kb on + strand, within EX28DRAFT_2805 at 109.258 kb on - strand, within EX28DRAFT_2805 at 109.404 kb on + strand, within EX28DRAFT_2805 at 109.404 kb on + strand, within EX28DRAFT_2805 at 109.417 kb on - strand, within EX28DRAFT_2805 at 109.426 kb on + strand, within EX28DRAFT_2805 at 109.426 kb on + strand, within EX28DRAFT_2805 at 109.427 kb on - strand, within EX28DRAFT_2805 at 109.427 kb on - strand, within EX28DRAFT_2805
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 107,040 + EX28DRAFT_2803 0.60 +0.4 107,040 + EX28DRAFT_2803 0.60 -2.0 107,040 + EX28DRAFT_2803 0.60 +0.9 107,041 - EX28DRAFT_2803 0.60 +1.4 107,041 - EX28DRAFT_2803 0.60 +0.4 107,673 + EX28DRAFT_2803 0.88 +0.7 107,673 + EX28DRAFT_2803 0.88 +0.0 107,674 - EX28DRAFT_2803 0.88 -0.0 107,911 + +0.3 107,912 - +1.0 107,928 + -0.2 107,928 + +0.5 108,117 + EX28DRAFT_2804 0.34 -0.8 108,117 + EX28DRAFT_2804 0.34 +0.7 108,118 - EX28DRAFT_2804 0.34 -0.1 108,145 - EX28DRAFT_2804 0.39 +0.6 108,145 - EX28DRAFT_2804 0.39 -0.2 108,147 + EX28DRAFT_2804 0.39 +0.0 108,229 - EX28DRAFT_2804 0.54 +0.2 108,229 - EX28DRAFT_2804 0.54 +0.2 108,229 - EX28DRAFT_2804 0.54 +0.5 108,254 + EX28DRAFT_2804 0.59 +0.3 108,320 + EX28DRAFT_2804 0.71 -1.3 108,327 - EX28DRAFT_2804 0.72 -0.3 108,432 - +0.2 108,449 + -2.4 108,450 - -0.1 108,467 + +0.4 108,468 - -0.0 108,468 - -3.2 108,495 + -0.0 108,496 - -0.7 108,502 - -0.4 108,591 + +0.2 108,591 + -0.0 108,591 + -0.1 108,592 - -0.0 108,682 + -0.8 108,682 + -1.5 108,682 + -0.3 108,682 + -0.3 108,752 - EX28DRAFT_2805 0.14 -2.1 108,780 + EX28DRAFT_2805 0.16 +0.8 108,781 - EX28DRAFT_2805 0.16 -1.7 109,075 + EX28DRAFT_2805 0.45 -0.6 109,258 - EX28DRAFT_2805 0.64 -1.1 109,404 + EX28DRAFT_2805 0.78 -0.5 109,404 + EX28DRAFT_2805 0.78 -3.4 109,417 - EX28DRAFT_2805 0.79 +0.2 109,426 + EX28DRAFT_2805 0.80 +0.2 109,426 + EX28DRAFT_2805 0.80 -0.9 109,427 - EX28DRAFT_2805 0.80 -0.4 109,427 - EX28DRAFT_2805 0.80 -0.1
Or see this region's nucleotide sequence